RNA id: TU4683


Basic Information

Item Value
RNA id TU4683
length 1106
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G3864
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22164164 ~ 22170365 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGCAACTGTCCTGCGTGCTGTCCGCTGCGCTGCAGTGCAGTCAATTGGCATGCTAAGGACAGACGGGCACTCATATAGGAGATAGTAGAACTAAAGAAGCTGAAAGGTTTCCCAAAAGGAAATGGAGATAGAGCGATACCTGACACACCTCAAAAACAGTGAGCGCAAAATTGCAATTCTTTAGGATGAGTTACAGCAGAGAGAAGAGCAATATCAAACCGTGGAGATGCATCTAGGAGAAAAGAGGCTGGATTTGTTAAAGGTGCATGCAGCAATActtgaaatggaagaaaaacacaactcaAACACAGCTGCCATGCAAGAACACATCACAAAAGACTTGTACCGATACTAAATTAAACGATCCTGTTATGATTCACTAATACAATGATTAGCTTTGGACAACATTCATCCTTTATAGACTTTACAACGTGATTAGATGTAGCTGCTATTCATGTATTTGCTATTAATGTACTTTTTTCTTATTAGTCATAATGAGACATCTCTAAACAAGCCATCAAAGCACAGTACAAGTTTACACAACATACCCGTCTACTCCATTACCCTAATTATGCAGCACCAGTCAAATTATGTTAAAGTAACCCATGCTAAACATGTCTCTACTGTTATAGTTTAACATTATTGAGTGTGTTGAATACCTCCATAGATTGTACTTTTGAATGTTACAATCCATccacattataaataacaaaagtataataattttaaatgtttaaaatacatttacagtacattaaaaaaaaaacatatgtttaGCCTGTAAGTCACCATtgtataaatattgattttaggGTTGACCACAAAACAATTGACAATTGCCTGacttacatttaaagaaataaacagtttaagtATTTTTTGATATGTATAGAAATGAGATTTGCCTTCTTTATCAACAATCAGTACATATAATGAACTTCTACTAGTGTTAAAATCAAGGTTAAACTTCCAGAGTGCTACTGTTAAGAGACAAAGACATTGTATCCAAAATATCGCCAAATACAATAGATATGCAGTGATTTAATAAGGACAACATATTTTTAACCtttacaacaaaattaaacccTTATCAGTAAATATGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4637 lncRNA downstream 182648 21976824 ~ 21981516 (-) True G3825
TU4560 lncRNA downstream 431446 21732472 ~ 21732718 (-) True G3768
TU4552 lncRNA downstream 565783 21595849 ~ 21598381 (-) True G3760
TU4528 lncRNA downstream 716914 21446692 ~ 21447250 (-) True G3739
TU4526 lncRNA downstream 718946 21444768 ~ 21445218 (-) True G3737
TU4703 lncRNA upstream 27236 22197601 ~ 22200678 (-) True G3882
TU4706 lncRNA upstream 54490 22224855 ~ 22225093 (-) True G3885
TU4721 lncRNA upstream 189420 22359785 ~ 22360096 (-) True G3898
TU4826 lncRNA upstream 601207 22771572 ~ 22771784 (-) True G3984
TU4843 lncRNA upstream 685661 22856026 ~ 22856405 (-) True G4000
AMCG00003863 mRNA downstream 39951 22102726 ~ 22124213 (-) True AMCG00003863
AMCG00003857 mRNA downstream 121153 22039190 ~ 22043011 (-) True AMCG00003857
AMCG00003860 mRNA downstream 130388 22020296 ~ 22033776 (-) True AMCG00003860
AMCG00003858 mRNA downstream 168921 21993333 ~ 21995243 (-) True AMCG00003858
AMCG00003859 mRNA downstream 216089 21917334 ~ 21948075 (-) True AMCG00003859
AMCG00003864 mRNA upstream 3894 22174259 ~ 22179397 (-) True AMCG00003864
AMCG00003862 mRNA upstream 22029 22192394 ~ 22202881 (-) True AMCG00003862
AMCG00003865 mRNA upstream 67437 22237802 ~ 22274733 (-) True AMCG00003865
AMCG00003866 mRNA upstream 190676 22361041 ~ 22373668 (-) True AMCG00003866
AMCG00003867 mRNA upstream 263253 22433618 ~ 22433887 (-) True AMCG00003867
TU4276 other downstream 2657411 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 2719421 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 2738798 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 4011783 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 4219222 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 1359154 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 1359154 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 1359154 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 2093542 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 2117766 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile