RNA id: TU4703


Basic Information

Item Value
RNA id TU4703
length 2635
lncRNA type intronic
GC content 0.35
exon number 2
gene id G3882
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22197601 ~ 22200678 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCcgtgggaaaaaaaatgtgtagttcttatgggtaaTCTCGAGATGTGACAGAACTTGATAGAAAGGATAGAAACTTAATAAACTATAACTTATGTGACACTTTCTAACATGACTCCTTCAGGATCCAGTGTGTGAAGGTGTCTGATGGTGGCTTGAGTTTCCACAAAGCCCTGTTGAATGTGTCTGGTACATGATTCTAAGTAGTATATTTTGTggcagcattttctttttgttttatgaaaacacaacacaatgaaatTTAACAGACGCGTTTTTAGAACGACTTGCCAGATCAATGTAGTTTAAGTTCCTATCATTCCTGTCATATCATGAGATTACgcataagaactacaaatggtctCAGAGTAAAACACCTTTTTTTCatggaaacaacaaaaaaattacaaaaaaaaatctgtagcAGTGGCcctcaaaatgttatttttctttctctctgtgtttgcagCAATACCTTTCCATACTACCACATATAAACAGAagaaaccccccccaccccccaaaaaaatactacgtgtgtgtatataaattgaACATGGACATTATGTGCTTACTCCCAATTATGAGCTTTCTAGATTAAATTCACCACATATTAaccttggttatacagtaaatgaattccataatttaactttaaataaggCACTAAAGCTAATTACTGTAACAACACCATAGTGGCACTTCTGCAAGCAGCTACATTTTGCCTTTTCTTATAGGCAGAATATTATGTAACAAAAAGGGACTAAGAGGTTGGAAATTTatcaaaaatgtttgtaaaataaaaaagccaaaaatttaaaataatgcttcCTCCATCCAATgtccagtttgttttttgaatcaatcagtaaattatatatcaagttgttttctttagtttaaTTATGTGAGAAGACTGTTTCAAATTCCAAAATATCAAGTTATTGTTACAGTTTGGTTCTGATAACCTTGAGACAAGTTTTGAAACAATGTTCTCTGCTATATCTTTATCACAGGAGCAATGAAACGGAAGTGTTTTATTCTGAGCAAATACAATTCTGTACCCTGAACAATAGCCataggaaaaaactaaaactatttaTGCCAAAGGTAGTATTGGATGACACAAGCAGTGAACAGCACTAGCTGAACTCACTACAGCTCTTGCCTATGTAACAGTTCTAAAGTGGCTACTAAAAATACTCAAAGCTTGATGTTTATGTGCTGCTATTGTTTAAGGAGTCCTATAGtatagaaacaacaaaacaaaacgacacCATCTGTGCAAAGGATCAAGGAACGTAATCAGCCTTTGGAATGCACTGCTATAACGTTTAGTAGGAAAACATGGTAAAGAATGATCTGAAGTGTAGTTGAGACATTTTTATCCTGTATTAGTCTTTCACAATGATCAATGACTGTCAGTGTACTGTTTctagaaacaaagcaaacagtTATTGGgctacatataaaaatatttcataCAAGTGTAACTACTAATCTTTGTCTAAGCAGATATTGACTATCATTTGGACAATGTTCTTCAGTTAGATGTATATAGCATAAAGTAAAAAGTATCAACCCACAGCAGCAATAGTTGGCTTGAGGACCAATTTTGCAGGTACTTAACTGGAGTGCAGGTCtatggaaaaattaaaaaaagctttgataCACTTGTATGGTTGGGATTTAAAGCTGTATGTTGACACTTATACATCATTCCTTTTTCAAGAATCAATGATTAAGTAGGGCATTAACCAACAAATACATTGAACAGAGGAATAGTAGCTCTAAGTTGAACAATCATCTCCACTGATTTTAACACTTTAACTGACCATTGATTGGTTTCTTTCCCTCGCTACGTTAAACACTTACAAAGATTTAACATGTATTTGGATGCCTTGTTTTAGATGAGGGAATTGTTTGCAAAATTCAAACTGGACTTCAAAATTGATCTATTTTGTGGAGGACACACACCCCCACAACCACACCCACTAAACACATCTATGCTTAAGCATCACAAAAGAGAAaaggtaacattttttttttacgtgaGACGAGATTTGGCCCATGTTGCACTAAGTGGCAAAATGCATGTGTGCAAATTTCCACTAAAACCTCAAAGACCTTGATCTGTGGTGGTAACACTTTTCACTGTCcccattttctgaaatatttttacaaCTGTGTAAATCATCACACTCCCTAAATCCTTGATTGTACCCAACTACACTTGCACAGGACATTACTAACAGATAACCTAGCATCCACAGTAAACATCTGATCATGCCATAATAATTTGGCtcaattattaaaacaacatggcattaaaaaaatcagaaacaaacaatgaTTATATGAAACATAGCatatatgacattttaaagataaaggctactgatgaaaaatgtaatctaccttcaatatatacaatgtaCAATTTCACTTTCTTACTGAATGGTGATTAAACAGTTAATCCCGATTCTTGAATCCTGACGGTTACAGGGtcagtaaaaatatatttttgaccAATACAAACAGCACATTAATTGGCTAACCTGATTCATGTagaatttgatttgttttaagttaataaaatacaattgcaaTAATTTACCTGAGAACTTCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4683 lncRNA downstream 27236 22164164 ~ 22170365 (-) True G3864
TU4637 lncRNA downstream 216085 21976824 ~ 21981516 (-) True G3825
TU4560 lncRNA downstream 464883 21732472 ~ 21732718 (-) True G3768
TU4552 lncRNA downstream 599220 21595849 ~ 21598381 (-) True G3760
TU4528 lncRNA downstream 750351 21446692 ~ 21447250 (-) True G3739
TU4706 lncRNA upstream 24177 22224855 ~ 22225093 (-) True G3885
TU4721 lncRNA upstream 159107 22359785 ~ 22360096 (-) True G3898
TU4826 lncRNA upstream 570894 22771572 ~ 22771784 (-) True G3984
TU4843 lncRNA upstream 655348 22856026 ~ 22856405 (-) True G4000
TU4887 lncRNA upstream 844637 23045315 ~ 23115685 (-) True G4039
AMCG00003864 mRNA downstream 18204 22174259 ~ 22179397 (-) True AMCG00003864
AMCG00003863 mRNA downstream 73388 22102726 ~ 22124213 (-) True AMCG00003863
AMCG00003857 mRNA downstream 154590 22039190 ~ 22043011 (-) True AMCG00003857
AMCG00003860 mRNA downstream 163825 22020296 ~ 22033776 (-) True AMCG00003860
AMCG00003858 mRNA downstream 202358 21993333 ~ 21995243 (-) True AMCG00003858
AMCG00003865 mRNA upstream 37124 22237802 ~ 22274733 (-) True AMCG00003865
AMCG00003866 mRNA upstream 160363 22361041 ~ 22373668 (-) True AMCG00003866
AMCG00003867 mRNA upstream 232940 22433618 ~ 22433887 (-) True AMCG00003867
AMCG00003868 mRNA upstream 292785 22493463 ~ 22508517 (-) True AMCG00003868
AMCG00003869 mRNA upstream 315101 22515779 ~ 22531824 (-) True AMCG00003869
TU4276 other downstream 2690848 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 2752858 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 2772235 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 4045220 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 4252659 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 1328841 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 1328841 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 1328841 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 2063229 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 2087453 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile