RNA id: TU4843


Basic Information

Item Value
RNA id TU4843
length 261
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G4000
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22856026 ~ 22856405 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gattCTTTTAAGCCACCTCAAAGATCAGTGGACAAACCTTTCAGACTGTGCGTCTCAGATGTGTTCAAAGACCAAGGGTCAGGGTTTTGTGTTACCGGCAAAATTGAAGCAGGCTACATCCAGACAGGAGACCGGATCCTGGCAATGCCTCCAAATGAAACCTGTACTGTTAAAGGTAACACTGGACTTAGGTTCCTTATGCATAAGTTCTCCCATTCTGTGTTGTTTCCCTggaatcaaaataatttaaccCATTATTTA

Function

GO: NA

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4826 lncRNA downstream 84242 22771572 ~ 22771784 (-) True G3984
TU4721 lncRNA downstream 495930 22359785 ~ 22360096 (-) True G3898
TU4706 lncRNA downstream 630933 22224855 ~ 22225093 (-) True G3885
TU4703 lncRNA downstream 655348 22197601 ~ 22200678 (-) True G3882
TU4683 lncRNA downstream 685661 22164164 ~ 22170365 (-) True G3864
TU4887 lncRNA upstream 188910 23045315 ~ 23115685 (-) True G4039
TU4978 lncRNA upstream 543456 23399861 ~ 23423473 (-) False G4101
TU4977 lncRNA upstream 564593 23420998 ~ 23423473 (-) True G4101
TU5017 lncRNA upstream 697871 23554276 ~ 23554524 (-) True G4130
TU5049 lncRNA upstream 884180 23740585 ~ 23743970 (-) True AMCG00003896
AMCG00003875 mRNA downstream 54797 22790248 ~ 22801229 (-) True AMCG00003875
AMCG00003870 mRNA downstream 298139 22535586 ~ 22557887 (-) True AMCG00003870
AMCG00003869 mRNA downstream 324202 22515779 ~ 22531824 (-) True AMCG00003869
AMCG00003868 mRNA downstream 347509 22493463 ~ 22508517 (-) True AMCG00003868
AMCG00003867 mRNA downstream 422139 22433618 ~ 22433887 (-) True AMCG00003867
AMCG00003880 mRNA upstream 226533 23082938 ~ 23089596 (-) True AMCG00003880
AMCG00003888 mRNA upstream 459801 23316206 ~ 23319144 (-) True AMCG00003888
AMCG00003887 mRNA upstream 465924 23322329 ~ 23333559 (-) True AMCG00003887
AMCG00003886 mRNA upstream 485839 23342244 ~ 23359840 (-) True AMCG00003886
AMCG00003893 mRNA upstream 673892 23530297 ~ 23533835 (-) False AMCG00003893
TU4276 other downstream 3349273 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 3411283 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 3430660 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 4703645 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 4911084 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 673114 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 673114 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 673114 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 1407502 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 1431726 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile