RNA id: TU4910


Basic Information

Item Value
RNA id TU4910
length 2053
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G4058
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23315628 ~ 23319122 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTAATGCTTAAGTCACCCAACAATATACTATACACTGTACTAAGCTGACCAATACTTAcatatggtttaaaaaaaaaaaaacaccggACATGCTGGTGCTTTATATGTTCGGGGACAAACTATCCCCATTAAACTGAATTCATAGGTGTACATGTGGTTTACTAGAAATACACTAAATCAGTGTTAAATGTACACTGAACTCTGCACAGATAGCAGCTACTGTATGAAGTGTTTCCCAAAATGTCAAACTATTACTCCTcctataaaagaaaatcaaagttGTCACATCTACATGGCAACAGTTTTCATCCAGGATCAAGTCATTACCCTGCAAACGCCGATCATGTTCACACAACCGGCACTGATGGATTCATGAATAAGTGTTCGTGCTGCCTAATGTTTTCAAGATCAATAAATCCCCACTGGCACCATTCCaggttaaaaaaagtattactaGTAAGATCTGTGCTTCATATAGTTCTACACACTGCAATGTGGCATATTTAGCATAAACCTACAAcagtttaaaatcacatttctgcttggaatgtactttaaaaaaagtactAGAGTAGATTAACTactttacactttacattttattgcatcaATGTATTCCCTCTGGCTTTTAGTTTTGCACACCCAGCAATGCATGTTCATCTACTGAGCAGGAGACCTACACTGTAGAGGTACAGGATCAAATTCTACAAACCACACCAGTCAGCTTCTGTTTCAAATGCGTTTATTCACACATTATTTCTTGGCCTTAAAGTACTCTTCAATGACATCCTTGGCTTGAGATTCCTTGCCGTAACCTTGATGACAACACAACTGCAGCCAACAACCTTGCGTGGCTTGCCTTCCCTGTCAATCTTGCAGAGGCCGACCCACTCACCAAGCTTCTTGTTATCATCGACTTGATGAGGTTGATCTGATGCTCGGCACAGAGCGCCTCCACGAGCTTCACATACATGGGCTCATCACAGTTGCCAGCAAGAACACAGAGATGGGCTTGGCGTTGTCCAGCGCTTTGGCAGCTTCGCGGATGCCGCGGGCTAAGCCATCGTGGATCAGTGCGGTCTTCAGCACCTCCTGGAGAGCAGTGTTAACATCCATCACACCTCCAGCAGCGATGCTTCAgcccagagacacagagaggcatgTTAGTCTTCACAGCACATCACCGAGGAGCTGCAGCTGAGCGCAACATGTGCAGCTACCGGCATGTCAGAAGGAGGATCTCACTCATGATTAGAGTGAAGGGGTATCCGACTAAAGAAGTGAAATCATCATAATCATGCTGTAGCTTCACTGCGCCATTGCTTCTGAAAACAGGACACATACTATAGATACGCGATCAAAGCATGCGTTTATACGTGCTGGCAAGTCTGCGAGTTACCGGAACACACTACTGCTATGCAATAACAGTGTTTTAACAGATCTACATGCACGGAACATCTCGCAGTGTCGTGAGCTTTAATCGCACATTATTCAACTACCTTTCCTTTCACTCACTGCGCATGTGAGGGGCTTTAACTGCACGTCCCCAGGTGCCACAGAGTAACAGACGTCAAACTTACCCTTCCTCGGCCATTGTAGATTATCGGTGGATGTTGGACTTAAATTGctgcaatataaaaatagaccGGTGGATTTGTTAGTGCCCATGTTAGTTCGATAACTTCGACTTCGGTAAAACGAAggatgttttgtatttttgacgGATtccgagacacacacaaaaactcacCCAAACCTCCTCTCTGACAGCGGAAAAAGAGGACGTCACAGCGTCGACGTCATTATTTTAAGCGCCCAGAGAGGAAGGACCCCGAGCAGGCTGTACATTTAGTTGCCGGACAAGTTGCCCAACTAGAAAACAACGTGTGTTTTTAAGCACGTGTGATTAATTCAATGCTACCCAAATCTGCATCTGTTTAAAATAGACAGACGTCCATATGGTTGGTAGAAAATGTCTGCTTCACTTTCTATTCGACTTTATTGATTATAGATTAAGTTGATATAAAATTCTACTTGAAATAAAAAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4834 lncRNA upstream 446489 22868878 ~ 22869139 (+) True G3991
TU4802 lncRNA upstream 546401 22728722 ~ 22769227 (+) False AMCG00003874
TU4741 lncRNA upstream 813799 22500917 ~ 22501829 (+) True G3915
TU4740 lncRNA upstream 814802 22500527 ~ 22500826 (+) True G3914
TU4730 lncRNA upstream 910774 22402604 ~ 22404854 (+) True G3907
TU4928 lncRNA downstream 13479 23332601 ~ 23338238 (+) False AMCG00003884
TU4929 lncRNA downstream 13479 23332601 ~ 23338238 (+) True AMCG00003884
TU4936 lncRNA downstream 42914 23362036 ~ 23362447 (+) True G4071
TU4956 lncRNA downstream 47069 23366191 ~ 23369996 (+) True G4089
TU5003 lncRNA downstream 202751 23521873 ~ 23531567 (+) False AMCG00003891
AMCG00003885 mRNA upstream 1751 23237346 ~ 23313877 (+) True AMCG00003885
AMCG00003881 mRNA upstream 178387 23135448 ~ 23137241 (+) True AMCG00003881
AMCG00003882 mRNA upstream 234114 23073014 ~ 23081514 (+) True AMCG00003882
AMCG00003883 mRNA upstream 249698 23061960 ~ 23065930 (+) True AMCG00003883
AMCG00003879 mRNA upstream 269396 23041823 ~ 23046232 (+) True AMCG00003879
AMCG00003884 mRNA downstream 16054 23335176 ~ 23338241 (+) False AMCG00003884
AMCG00003889 mRNA downstream 55171 23374293 ~ 23389309 (+) True AMCG00003889
AMCG00003892 mRNA downstream 91213 23410335 ~ 23423173 (+) True AMCG00003892
AMCG00003894 mRNA downstream 126700 23445822 ~ 23447419 (+) True AMCG00003894
AMCG00003890 mRNA downstream 140718 23459840 ~ 23520587 (+) True AMCG00003890
TU4606 other upstream 1391841 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1554998 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1766095 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3946362 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 5163314 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 391116 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1364278 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2474930 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 4743241 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 4743552 28062674 ~ 28067786 (+) False G4831

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043218 True 606 mRNA 0.50 5 NC_007134.7 31431978 ~ 31435922 (+)
grasscarp (Ctenopharyngodon idella) CI01000001_12926362_12928572.mRNA True 1321 mRNA 0.41 4 CI01000001 12925414 ~ 12928579 (+)