RNA id: TU4923


Basic Information

Item Value
RNA id TU4923
length 1608
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G4059
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23315334 ~ 23322675 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggtgttcctaataatcctttaggtgagtgtatatatatatacacatatatacatacacactcacacatacataccCACACATAATATAATTAACCATAattgggtacaagtttgtaatttgcaatttgtggaTGGATCACTGTTCTAAATTTGGTGCAGGCCTAGCAATGCACCCTCAAATCTGAATACCTGGCCATAAAAGTTCTTGCACACAAAAGTGTCAATTATTTGAACATAACAATTATAAAGTTAGGTTTAAGGTTGATGTGTTAATGCAAGGACAGTGTTTGTTAACAGgattttagattaaatattttaagaaaattataaaagatagctctggactcctgaacagagggttgtgggttcaatcccaggtggaggacactgctgctgtacccttgagcaagagactgtacctagattgctccacttaaaacccagctgtataaatgggtaattgtatgtaaaaagtaatgtaatatattgtaaatattgtatatattgttcaAAATACTAGAACAAAGACATTGTTGCTTGTCAAACCCAAGCTGTTAGTGTTGGCTGTGGACCCTACTACCTACTGCGGCTTCATGAGTGATGAGTGTCAGCCTAGAACAGGGATTCCCTAACCATTACCCCCAGTCCCCCCGTTCTGCTGGATTTCATTCCGagcttttaattacttaattgaaccatatattgcattgttagttaaTTTAAGGATTCAATAAGCAATTCAGAACAAGGAAcagtagggcagggggtactccatgACAGATTTGGAAATCGCTGGACTAGAATCAAACCTGCAGCTCCCAGGCTAGGGTTTAGGTTTGTTGCAGCtcaaaattatacttttttttttccccctcattaatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggatttttttgctgttattctgtctctcactgttaaaatacagctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttttccctcactgtataactcAATACCAGATTCAACGGATTTTCAAGTaaaccattttatatttatgtttgtaatttatttgcaaataagGTTATGAGTATACTTATCATCTACTCTGTAGGAATCAAGAATTCaaattatagatttttaaaatcgttttccttttaattataatagaaaagttttaaaaaaaaagtataatttactCCTTCTTATCATTTTTTTGagctttttccctcactgtatattaaatacaattagcAGTGCATCttagcaaaacaattaaaaattaataaagatCTTTCTTGCcttcattattacaaatataatctaGAGTCTCCACATTCAGTGAGTTAGTTACGGTCCTTCAGTAATTCTTCAGTGCGGCTCAGATTAACTCTGGTTCAGGAGCAGAGTTCTTTCACTGTTAGATTCATTCTCAGCTACTTGAGGAGATCTAAGATCAAGacaagttaatttattattgagaGTTACCAGTCTTTACCACTGAATATACTGCAAACTAGATACACATTCTGaagcatttattcattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4834 lncRNA upstream 446195 22868878 ~ 22869139 (+) True G3991
TU4802 lncRNA upstream 546107 22728722 ~ 22769227 (+) False AMCG00003874
TU4741 lncRNA upstream 813505 22500917 ~ 22501829 (+) True G3915
TU4740 lncRNA upstream 814508 22500527 ~ 22500826 (+) True G3914
TU4730 lncRNA upstream 910480 22402604 ~ 22404854 (+) True G3907
TU4928 lncRNA downstream 9926 23332601 ~ 23338238 (+) False AMCG00003884
TU4929 lncRNA downstream 9926 23332601 ~ 23338238 (+) True AMCG00003884
TU4936 lncRNA downstream 39361 23362036 ~ 23362447 (+) True G4071
TU4956 lncRNA downstream 43516 23366191 ~ 23369996 (+) True G4089
TU5003 lncRNA downstream 199198 23521873 ~ 23531567 (+) False AMCG00003891
AMCG00003885 mRNA upstream 1457 23237346 ~ 23313877 (+) True AMCG00003885
AMCG00003881 mRNA upstream 178093 23135448 ~ 23137241 (+) True AMCG00003881
AMCG00003882 mRNA upstream 233820 23073014 ~ 23081514 (+) True AMCG00003882
AMCG00003883 mRNA upstream 249404 23061960 ~ 23065930 (+) True AMCG00003883
AMCG00003879 mRNA upstream 269102 23041823 ~ 23046232 (+) True AMCG00003879
AMCG00003884 mRNA downstream 12501 23335176 ~ 23338241 (+) False AMCG00003884
AMCG00003889 mRNA downstream 51618 23374293 ~ 23389309 (+) True AMCG00003889
AMCG00003892 mRNA downstream 87660 23410335 ~ 23423173 (+) True AMCG00003892
AMCG00003894 mRNA downstream 123147 23445822 ~ 23447419 (+) True AMCG00003894
AMCG00003890 mRNA downstream 137165 23459840 ~ 23520587 (+) True AMCG00003890
TU4606 other upstream 1391547 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1554704 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1765801 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3946068 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 5163020 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 387563 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1360725 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2471377 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 4739688 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 4739999 28062674 ~ 28067786 (+) False G4831

Expression Profile