RNA id: TU4936



Basic Information


Item Value
RNA id TU4936
length 412
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G4071
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23362036 ~ 23362447 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCGCGACGACAGGCCGGGTTCTGCGGCTGCGCACAGAGGAGCAGAGCCAGCACTGCCGCTGCGCCGCCGCTCCGGAGTCCGCCTCACAAACACCCGCCGCGGAGCGACCCTGGAGACACACCACCCAAACAAACCGCAACGTGAGCCCGCAGGAGCCATTTTCCTTGCTTAAGCGGATTCCCCCACCACAGGAGTAATGCATACGTGACAATAAACTAAGGTGGGTTGAGGCTTTAGGCTGCTAAGCGAATATGTAATAAAGTAAACTGGAATAATTGAACGGGTTAcagttatttgtttgtatgtaagTTACTGTTTTGTGTCTTGAATCGCTACAGAAACTTCCCTCTCGTCTTACATTTACATAGCCGCAGCAGGCTGGTTTGTACGTGTTTCTTGCTGCTCCTGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4909 lncRNA upstream 17031 23266270 ~ 23345005 (+) True G4057
TU4928 lncRNA upstream 23798 23332601 ~ 23338238 (+) False AMCG00003884
TU4929 lncRNA upstream 23798 23332601 ~ 23338238 (+) True AMCG00003884
TU4923 lncRNA upstream 39361 23315334 ~ 23322675 (+) True G4059
TU4910 lncRNA upstream 42914 23315628 ~ 23319122 (+) False G4058
TU4956 lncRNA downstream 3744 23366191 ~ 23369996 (+) True G4089
TU5003 lncRNA downstream 159426 23521873 ~ 23531567 (+) False AMCG00003891
TU5055 lncRNA downstream 404961 23767408 ~ 23767759 (+) True G4162
TU5056 lncRNA downstream 411293 23773740 ~ 23774052 (+) True G4163
TU5057 lncRNA downstream 412193 23774640 ~ 23774943 (+) True G4164
AMCG00003884 mRNA upstream 23795 23335176 ~ 23338241 (+) False AMCG00003884
AMCG00003885 mRNA upstream 48159 23237346 ~ 23313877 (+) True AMCG00003885
AMCG00003881 mRNA upstream 224795 23135448 ~ 23137241 (+) True AMCG00003881
AMCG00003882 mRNA upstream 280522 23073014 ~ 23081514 (+) True AMCG00003882
AMCG00003883 mRNA upstream 296106 23061960 ~ 23065930 (+) True AMCG00003883
AMCG00003889 mRNA downstream 11846 23374293 ~ 23389309 (+) True AMCG00003889
AMCG00003892 mRNA downstream 47888 23410335 ~ 23423173 (+) True AMCG00003892
AMCG00003894 mRNA downstream 83375 23445822 ~ 23447419 (+) True AMCG00003894
AMCG00003890 mRNA downstream 97393 23459840 ~ 23520587 (+) True AMCG00003890
AMCG00003891 mRNA downstream 159379 23521826 ~ 23533875 (+) True AMCG00003891
TU4606 other upstream 1438249 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1601406 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1812503 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3992770 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 5209722 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 347791 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1320953 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2431605 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 4699916 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 4700227 28062674 ~ 28067786 (+) False G4831

Expression Profile