RNA id: TU4978


Basic Information

Item Value
RNA id TU4978
length 941
lncRNA type inter_gene
GC content 0.34
exon number 6
gene id G4101
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23399861 ~ 23423473 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GacaggtttcttttttattttaaaatagttccATGGAATTAATCCCAAACAGGCAATGGATGATCACAACTATCAACATtggtccccccccccacattaACTTTTAGTACAAAGCACCACTGATTATTGCTATGTAAAACTGtcagaaataaaagtaatacatagaagaagaaaatgtcaaaCACACAAGTCACTACAAGCTCTAAAGCGTtcttaaaaagaataaaaaaaacatcgcGCAGAGTGCCAGTCCACGAGGAATGCTTATCCAGCCGCACGTCTGAGAATCGCAATtcaggtgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagctgagaaCAATGAGGTGAAGTTGAAAAGAAATTCTACTGCAGGAAAGCGGCTTGATAGAAGAAGTATGAACAGTGCATACTGGTTAATTCCACTACCACAGGTCTAAAAAAATTAGCATTTACAAAATACTTGATAAAAAATATTCTTCTTTCCAATTGTACAAGAGGTGCATAAAATCAACTAAAAGTTCATGTAAGATGATTCActcattctttcttttcagcTGCTGGCTCAGTTTTCTGTTCCTCGTCAGTCTTGGTCTCCCCGTTCTCGGCCAGCGCGGCACCTGCGTCCACTTTTTCGTCTTTCTTCCCTTTTCcgccttttttcccttttgcagCTGCCTTTTCCGCAACTTGTTTCTTCACGGCTGGCTTGCTTGGCTTGGGCTCAGGTTTGGGTGGAGGAGGTTTAGCTGACAATCTCTGGGATCTTCTTGTTGgCTCCTGTTTTGTGACTTTAGTTGAATCTTTGCCTTCAGCACCCTCTGGAGACTTCCTTTTCGGCATGTttgcagtgtttcttttttaaatatatatagtacaagATGAAAGGCGAGCTGCAAGACGCGAGTTTGTAACTAACACAGAATACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4887 lncRNA downstream 284176 23045315 ~ 23115685 (-) True G4039
TU4843 lncRNA downstream 543456 22856026 ~ 22856405 (-) True G4000
TU4826 lncRNA downstream 628077 22771572 ~ 22771784 (-) True G3984
TU4721 lncRNA downstream 1039765 22359785 ~ 22360096 (-) True G3898
TU4706 lncRNA downstream 1174768 22224855 ~ 22225093 (-) True G3885
TU5017 lncRNA upstream 130803 23554276 ~ 23554524 (-) True G4130
TU5049 lncRNA upstream 317112 23740585 ~ 23743970 (-) True AMCG00003896
TU5051 lncRNA upstream 317112 23740585 ~ 23743970 (-) False AMCG00003896
TU5052 lncRNA upstream 317112 23740585 ~ 23743970 (-) False AMCG00003896
TU5050 lncRNA upstream 318615 23742088 ~ 23743970 (-) False AMCG00003896
AMCG00003886 mRNA downstream 40021 23342244 ~ 23359840 (-) True AMCG00003886
AMCG00003887 mRNA downstream 66302 23322329 ~ 23333559 (-) True AMCG00003887
AMCG00003888 mRNA downstream 80717 23316206 ~ 23319144 (-) True AMCG00003888
AMCG00003880 mRNA downstream 310265 23082938 ~ 23089596 (-) True AMCG00003880
AMCG00003875 mRNA downstream 598632 22790248 ~ 22801229 (-) True AMCG00003875
AMCG00003893 mRNA upstream 106824 23530297 ~ 23533835 (-) False AMCG00003893
AMCG00003895 mRNA upstream 219331 23642804 ~ 23653555 (-) True AMCG00003895
AMCG00003896 mRNA upstream 319570 23743043 ~ 23757796 (-) False AMCG00003896
AMCG00003900 mRNA upstream 337129 23760602 ~ 23786763 (-) True AMCG00003900
AMCG00003899 mRNA upstream 400304 23823777 ~ 23845018 (-) True AMCG00003899
TU4276 other downstream 3893108 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 3955118 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 3974495 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 5247480 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 5454919 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 106046 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 106046 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 106046 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 840434 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 864658 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile