RNA id: TU5313


Basic Information

Item Value
RNA id TU5313
length 2122
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G4362
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24685016 ~ 24687137 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaaaGTCATAAATATATGCAATGGATGGTACAACTGAAAAACCATTTAAAGTGAAGGgattattgaaaaatacataacagtGAATTGAGTGTATGATTAacagtttaaacaaattacatggGGGTACAAATACCAGGTTTGTAGGACCACATGAGAAGCATGAATTATATATTGCATGTCTCCAACACACTACTCACTTTTTAATGAAGACCACACAGTGAAAGTAAACCTGAGTTATGATCAGATGGACTCTGAATTTCAGACTCTCACAGTTTCTCACACACCTGCATTGAACAATAGTATATCCTGTGAATTTTAAAAGGAAGACTATTCATTGTGATACAAATATTGagtgttaaatgtttgtgtatagAAAACTGAAATACCTCAACCTAGAAAATGTTAACATTCTGAGAATAGTATAGGTCAAATAGCCTTCTTTCAAATATCCAAATCATTTGTGCATAAGGTTATGTGAATTCCTATCCTTTTAATGCCATACAAAATGTTTACCAAACTAAATGTGTCAGAAAGTCACTCTTCCCCACCAATGTGGTTTTCATTGATTTTATGAAGTTCaaataatcatttgtttttcaccaaTAAATTACTAAAGGCTTTTCAAAGGAACCAAAACATTTGTCATCTAATCTCAAATTCTACAAAGCTGTTATTTCAATTATAGCTATATAAAAAaccaacatttttaaatatgcaaaataaatgtgtttgttgcatCCTAAAATGGATGCAATAATTAAAGTCAAAactttataaaattaatattttcaaagatcAATCTTAAATTTGCATTCAATTTTACACTCAAGACCACTAACAAGGTGGTATTAATCAACACACTCACAATTATATCTACCCAACCAAAACAATGACCTTTAGCAAGAGGAAGAagtaatattttgttaattaaaaacagaacttACATTGCCTTAGAGACACCTCAAATTATTATTGTCttgaatatatttgtatcaATTTAAATGCCGTGGTCTTTCAGATTGCACATCTTATCAAATGTCTACCGTGCATTCATCTAAAATGTGAAGTATTAGATGAGTGATTAAGGCAAGCCACACAAACTGATCTCAATACATCAACACATTACTTAGTTTCTACTTCAATAAATGCATTAAGACaggtatattttatgtaaactTTTAATCCCCTTAAGTTTAGGGCTAGTGTTCAtcatttaaaaccaaacacacacaataaaaactcAACTGTATAATACTGTATGGTATCATGTATAAGTTCCTGTCACCATATAGCAATTGTGGCATTGTATGTACAACAGTCTTTACCAATTGTTATACAAGTTATGAAAACGTTTAAAAGGGTGTTCTACAGAATCTTTTTCTGTTCAACCAtgatacatataaaacattttagagatctgttttaatgaaatactgcTTGGGTTtggatgacaaaaaataaataacacaaaaaacatgaacaacaacaaaagaaaaaggtgcAGAATTTGCATGCTGGACACAGAGAGAACAAGTTGACTTTATATAGACAAAAGCTAGACTAACAAATTCAATTCCAtcaatttgttttcctattCAAATTGTCATGAGTTTAAGGTTGAGGACAGTCAAGAAAGAGAACTGGCCTTTTGTCCAATGACACCTCAGTCTTTCTGGTGGGAGTGACTGGGCAGGAGGATAAGACAAAACCGAAAGGCAAGGACTTACTCTAGGATTGCACTTTCCTTTCATTAAACCACATCAAAACCACAAATATAGGCCCACCCCACTGAGGATCAATGCTAGTTTAAAATTTCCTTCACATCCACTCATAGCCATCAGAAAGGATGCGGTACCTGGGtacctgaaaacaaaaagcttcCCAGGTAGCCATACGAGTACCTGGgaagctttttgttttcaggaCCCTGTACCTGCTGGTTCCCCTATGTAATAAAGTAGGGCTTTGTTAAATTTGTTAAATAgtatttactgtactgtactttgtgTCCAGTGTGCAGATGTCTAGCATAAGAACTTAAATATGGTATTTGTAGTTATATTCAAtgttgtacacacacaaaaatacattaaggtAGTAAAACTGTTCATGGTACATTTt

Function

GO:

id name namespace
GO:0008190 eukaryotic initiation factor 4E binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5310 lncRNA upstream 20833 24663939 ~ 24664183 (+) True G4359
TU5309 lncRNA upstream 22235 24657907 ~ 24662781 (+) True G4358
TU5305 lncRNA upstream 37261 24647509 ~ 24647755 (+) True G4354
TU5302 lncRNA upstream 74454 24610274 ~ 24610562 (+) True G4351
TU5174 lncRNA upstream 555124 24128552 ~ 24129892 (+) False AMCG00003910
TU5432 lncRNA downstream 794461 25481598 ~ 25554089 (+) True G4452
TU5466 lncRNA downstream 922941 25610078 ~ 25610296 (+) True G4482
TU5503 lncRNA downstream 1127154 25814291 ~ 25888313 (+) True G4512
TU5526 lncRNA downstream 1242330 25929467 ~ 25929680 (+) True G4526
TU5542 lncRNA downstream 1257006 25944143 ~ 25944352 (+) True G4536
AMCG00003915 mRNA upstream 130900 24552140 ~ 24554116 (+) True AMCG00003915
AMCG00003912 mRNA upstream 144643 24501990 ~ 24540373 (+) True AMCG00003912
AMCG00003914 mRNA upstream 186460 24465051 ~ 24498556 (+) True AMCG00003914
AMCG00003913 mRNA upstream 261175 24366199 ~ 24423841 (+) True AMCG00003913
AMCG00003911 mRNA upstream 365368 24310608 ~ 24319648 (+) True AMCG00003911
AMCG00003918 mRNA downstream 81820 24768957 ~ 24776655 (+) True AMCG00003918
AMCG00003922 mRNA downstream 95657 24782794 ~ 24825995 (+) True AMCG00003922
AMCG00003925 mRNA downstream 142292 24829429 ~ 24829785 (+) True AMCG00003925
AMCG00003926 mRNA downstream 165523 24852660 ~ 24868862 (+) True AMCG00003926
AMCG00003923 mRNA downstream 197059 24884196 ~ 24966367 (+) True AMCG00003923
TU5311 other upstream 1096 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 971882 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 2761229 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 2924386 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 3135483 21549201 ~ 21549533 (+) True G3751
TU5497 other downstream 1106915 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 3375226 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 3375537 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 5584073 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 6200858 30887995 ~ 30894827 (+) True AMCG00004056

Expression Profile