RNA id: TU5621


Basic Information

Item Value
RNA id TU5621
length 2324
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G4602
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26277444 ~ 26279767 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACAATGCCTGTTTCCTACATTGTTTAACACAGAAAAACCTATCAAAGATTGTAATGCAACATCAAAgtagtttttctgttgttaaacAAACATGGTGTCTCAATGAGTTGTAATACACTTACACACATCCCCATCTAAAGATGgaataatttgaaaacatgcatttaaaaaaacaaactacctTCTAACGAAAATAGATTGAAAATACTATACAAATCTCAAGATAGCCCTGCTGTCTGTGCTTGTTATATTTGAGTAAATGGCAAAATCGTTTGCTCTGCTTGAACTTCTAATAGGACACATTTCTTCTTTGGAGATAAATGATAGTAACTTAAGACTGTAGAAATTAAACAAGAATTCAGGTAAGGATGGTTTAGAAATCTTGATGCTTTAATTTTGTTGGTAGTATAggcaaataatgaaaacattagaGTGATCAGTGTTCGGTGTGGATCAGGTTATCCAGAGAAGACAACACTCCCTAGTTAGGTCAACACAGTACCCATTGTGAGCACAAAGAGAGAACGAGGACAGCAGACAAGCATGCTGAGAAATATTGTTCTCTCCAGAAAGCAGCACACAGCTACTCCTGAGAAACATGGTGACcctcctaaattagctcaggtgcaaccaattgccttcagaattcacacaataaggtgaatggagtccatctgtgtgcaataaaagtggttcacatgatttcagatgaAAAACACTCATCTCTGTAAGGTCAGTTGgatagtgcattcaaagcaaagatactaccatgaagaccaatgagctttcaaaacaactctgggataaagttgtggaaaggcacagatcaggtaGAGAGTATTAAGAAGCAGTGAAATATCATTGGGAGCACAGGCAAACCCATCATTAAAGTAAAGTATAcagcaccacccagaatctgcttgGAGCAGACTGTCCTCCCACACTGAGCACCCATAAGCAGTAAGAAGCCACCAAGGGGCCAATGATaactctgaaagacctacagTGTTACATGGCTGTGATGGGAGACTGTACATGTatcaacaatagctcaggttCTTCACAAATCTGGTCTGTATGGAAGAATGGCAAGAAGgaagacatttctgaaaaaatgatgtaaaatccCACTTGGAAATTGCAAAAAGTTATGAGGGtcagatgaaacaaaaattgATTATGATTGgggcaaacccaacacagcacaccacccaggtaacaccatccctactgttgAGGCAGCATCATGATATGGGGGTGCTTTGCAGCGGCAGGCACTaggaagcttgtcagggtagagggcAACATGGATGGCACTACATACAAGCAATTCTttaggaaaacctgcttcagtctgcaaaagagcCAATACTGTGATGGAGTTTCACCTTTAGGCAGGACAATGACctgcacacagccaaagcaacaaTGGAGTGGCTTAAAAGCCTGGACTTAAACCCAATTGAGAACCTGTGCCAAGACTTGAAAACTGGGGTCCACCAACAATCCGCATATGACATGACAaagctttaattattttgctaAGGAAAATGAGTGAATATTTGGACAATCCTGATGTGGAAACCTGTCTCACCCCAAAACACTCACATCTGCAATTACTGCCAAAGGTGGACTTGGGGTGGCAAATACTTCTTGAAGCAAAGcctttgcattttaattgttgtttcacATATATTGGTTTCTAGGCTGGAAGTGTTGTGTAGGTTGAGTAAACGACCCATTTTAATCAAAGTTTCAGgttataacaaaatgtgaatatgTAGACACACAGTTAATAAGTAAATGGATGCATGCATTGGAATGTACACTCACTCCTTCTGGTAACACAACACAGGCaagatataaaatacattttgattttgttctcATGTTCTTTGCCTTGTGCAAGTCAAATATGGTTACAAAGTGAGCCCACAGAAGCAAGTTGGCTGGGACACATCAAAGGGAGTGGTTAAGTATAGTCTGCGCATACTCATTTTGGTTCAAATGCAGTGACTGACTGGACTTGTGCTCCCATTTTAAGGGCACAAGGGGCACAGTATTCCATTTAGTTCTCTTTGGACAGATTAATACTGCACTACCAACTGGGTTTGTACTCTCCCATTTAGTGTACAGCACTGTATGCTTCGAAATGCATCCAAAAAAACAGATCAACTGAAACAGGATAAAATaagccattaaaaaaagtaagACCCGAAgtatattttccatatttcgAAAGCATAGCCCTATAGAATTAACCCTTTCCTATTGTACTTATCAATGTATACATCAGAAATCTGTGATTCcacttaacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5572 lncRNA downstream 278816 25997435 ~ 25998628 (-) False AMCG00003946
TU5435 lncRNA downstream 810011 25466252 ~ 25467433 (-) True G4455
TU5390 lncRNA downstream 1209202 25063554 ~ 25068242 (-) True G4415
TU5352 lncRNA downstream 1395835 24820841 ~ 24881609 (-) True G4390
TU5361 lncRNA downstream 1403558 24868711 ~ 24873886 (-) True G4397
TU5651 lncRNA upstream 80090 26359857 ~ 26365069 (-) True G4624
TU5652 lncRNA upstream 80649 26360416 ~ 26365069 (-) False G4624
TU5695 lncRNA upstream 254113 26533880 ~ 26586892 (-) False G4660
TU5701 lncRNA upstream 279102 26558869 ~ 26561251 (-) True G4665
TU5694 lncRNA upstream 305719 26585486 ~ 26586892 (-) True G4660
AMCG00003950 mRNA downstream 20405 26225466 ~ 26257039 (-) True AMCG00003950
AMCG00003951 mRNA downstream 62769 26155543 ~ 26214675 (-) True AMCG00003951
AMCG00003952 mRNA downstream 159920 26086747 ~ 26117524 (-) True AMCG00003952
AMCG00003945 mRNA downstream 261844 26006850 ~ 26015600 (-) True AMCG00003945
AMCG00003946 mRNA downstream 278816 25965420 ~ 25998628 (-) True AMCG00003946
AMCG00003953 mRNA upstream 1769 26281536 ~ 26289404 (-) True AMCG00003953
AMCG00003960 mRNA upstream 145572 26425339 ~ 26446838 (-) True AMCG00003960
AMCG00003961 mRNA upstream 296369 26576136 ~ 26581454 (-) True AMCG00003961
AMCG00003965 mRNA upstream 344873 26624640 ~ 26633703 (-) True AMCG00003965
AMCG00003966 mRNA upstream 372139 26651906 ~ 26683835 (-) True AMCG00003966
TU5513 other downstream 375832 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 1981668 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 1981668 24288131 ~ 24295776 (-) False AMCG00003909
TU5014 other downstream 2743562 23529519 ~ 23533882 (-) True AMCG00003893
TU5805 other upstream 585387 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 6029713 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 6128035 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 6313860 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 7852331 34132098 ~ 34135600 (-) True G5801

Expression Profile