RNA id: TU5652


Basic Information

Item Value
RNA id TU5652
length 3258
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G4624
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26359857 ~ 26365069 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gatttaaatacaaagaatatataatgatatattttccatttacaatgacaattttattgtaaacaaaattgGCAGATACTTTATTATTGGGTAATAGTTCCTATTTGGCCTGTAAGGATTAAAAGACAGTATTATAGCTGAATTATTTAAGTTACTGCAGTTTTAACACAGCATGTTAACTAATGCTACATTCTTGCAgattaataatacttaaatgcaattattttcttctaggtgtaaattttgatttaaacttAGTGGATGTACAGTTTGGTATTTGCATAACTGAACATGCAGCCCTATTTGAATCCTTTTCCTTGTACAGCACAATGTTTATACTGGTTAAAAAGAGACACACAAGGTAATCTATGCTAAACAATTGCTTACAATGTTTAGTTTATGTCTTCCCAACAGaactattaaatacatacatcagtCAGCTATTTTTCTGCAAGAGGAGCTAGTATAACAAGTGATAAAAAACTGAAAGTGGTTAAAAGTAATGTCACAAAAGtaggatttgtattttttgagtgtactgtaaattgtaagtgTGCTGCAATACCAATTTTAGACACTCAAAATCCACACAGCCTGAAGGGTTTTCTGCCATTAATGACAAGGAACCACAAGCAGCTGCTTACAACAGCAAGCACCACAATTTGgccattttctttatattacaGTGACTTTGAAACTTTAGATTTCCATCTCTCTTGCCCCTGGTTTCATAACATCTCTGATGCCAGCTTGAGAGTTAACCAAAACATTACAACAATTAAGAGTTAATAAATGGTCCCATCCTTTTTAGGTGCTGTTCTCAACACAAATATTCCCTTTTCTGCCTgggattattttttgttttaattcagattaGTCCCCTGAATTCATTTTAACCTTTAGGGgaacaaagaataataattaaaaaaaaacactactgtCACTATTCCACCCTAATGAGTCCAGATTAAATTTTCTGcacaaaataattttgtcaGCCCaacatttgtgtgtgaaaaataaGGTGTAGTGTTGGAATAATACAGTAGGATAGAGAACATTCTTTTTCCTTCCCACATTCTACTCATTTGATACCAGATCTGTTTCTCCAGGCCTCCCTTGAATCTTAAAATAGCGAGAATTTAGGATAATGTAACACAAACTGAATTGTACAAAACTGCAATGTGTCCATTCTCCGTCTCAATTAATATGCACAGGTTgaccttttcttctttcttcaaAAGACTCTCTCAGAAAGTAGTCTCCTAGGAAAATCATTATACAGATTAAAGCAAGATGTTTCTAaagcctgaaaaacaaaaggtgcAACTAAAAGCAAATAACGATGTCCCctccaaaaaagaaataatcCAAGTATTTACCCATCctgcctcccccacccccaatccCCCAACAGTGGAATCTACCATTGACTTTCtaaatttaaagcattacaacCCTGTTATATAATAAGGCCTTTGAGATACAGGAGCCAACTGGAATGTACCATATAATACGCCACACTACCTTTCACTTCCAAATAAAAACCATCTCCAAAGTCTtatgtttttagatttgtaGATCATTGTGAGTGACGATCCTAAAAAGCTAGCctgtatatttttattgcattaatGAAACGCACAGCCCAAACTATCTGCAACAcctctaattttaaatgtgcgCAAACACAGAACCAAAGACACAGAGCAGCAGAAGAGAGAATTTCAATTAGTGAAACTGACAGCGATCATAATGTCATACAACAGCAGTCCCGAGATGTTTGATTCAGTAACTCTGTGCCGACATACCATTGCATTAAGGCAAATCGAGTAGAAACACTGTAATGTTGACAGAGTGGGTGGCTGTAGTCGAAtgtcttttaaacatttcacttttaGCTATATAGTCGAGACAAAACATTTGTCAACAGGTTCTCTCCTCATTTGTTTCTGATGAATGAAAGTACTAACAGAAGCACTTAAATGGAACCCACAAATGTGAAAGATGGCCTTCATGATAAACTGTGAAAAAAAGACCAGTCCACTGAGGCAACACCACTGTTCCATGCATCACTGTCTGCTAGTATCTCatgaacaattacaaaaaacaaaaaaaaaatgcttaaaaatctAAAGCCTATTGTATGGGAAATAATGCGACTTCTGGCAGTTTGAACCGAGTCAGGAGAAGAATGCCTTGCCTTAGCGACGGCCGGAGCACCCATTAAGAAAGTGTGCCGTGTTACAAAAGCAACTAAAATCCCAAACTGGAGACCTTTAGGTGCCATCTTAAAGAGATGCAACACTTTCAGAATGACGGCCAGCAGTTTTCCCCCAGTACAACCGAGAGTCCTTGGACATCCagactacaaaataaaatacaacataaaaagtAGTGAGcccctttgtttatttattcaactgTAACAAAATGTGCCTCCCCTCCCCTCATCCCTTTGCCCCGATTCCACACCATAGACACGGCTGCAGCGATCTCCAGTTGTTTAGGCTTTTCAGTTGGCGAGGCAGGGGACTCTGTCATAGGCAGTGCTAGAAAAGAAGAGCTTCAGGCCATCCATGTGTGAGCTGCATTTAATCATACACACACTAACAGCTGAGACTCGAGACCAAGAATAAGTGTCGGGGTACTGGTTCATCTTGcgtctccccccccaccccacaaaaaaaataaaaaagaaacctaGTCGGTGTTGACCTGTGTGCAAGAATGGTTTGATTTAGATTCTGGTTGTTGTTGGTGTTCACCAACGAGATCAGTCTGAGAGCTGGCGGCCGGACGGGAGGCCGGGCTAGTCGTCGTCGTCATCGTCCTCCTCGCTCTCCTCGATGCCATCGCTGTCCTCTTggtcctcctcttcctcctcagtcTCGGGGATGTCCCACTGCGGGTGGTTGTCTATCATGGCCTTGGCCTCATGGACTTCCAGCTTTAATGGCTTTATCTGATCCAACCCCATGTAGGAATCTGATCTCAATATCACTGAATACTGATAATTTCCAGTTTTAGATGGTGCAGGGAATTTCAACTcaacCTCTTCAGTCTCCTTTAGCGTACAGACGTGATAGGGCATTGACACTAAAGTTTGTTCTCTCCTGTCAGCGATGTACAGCCACCACCACTCTTGCTTTTCCTCTGGGAAGTACAAGCTATAAACAGGATGTGTGATCTTTGATTTGGTCTCCAGGAGAGCCCGCTCTCTTCGTTGTATACTCTGCTGCAATGCTTCCCATTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5621 lncRNA downstream 80649 26277444 ~ 26279767 (-) True G4602
TU5572 lncRNA downstream 361788 25997435 ~ 25998628 (-) False AMCG00003946
TU5435 lncRNA downstream 892983 25466252 ~ 25467433 (-) True G4455
TU5390 lncRNA downstream 1292174 25063554 ~ 25068242 (-) True G4415
TU5361 lncRNA downstream 1486530 24868711 ~ 24873886 (-) True G4397
TU5695 lncRNA upstream 168811 26533880 ~ 26586892 (-) False G4660
TU5701 lncRNA upstream 193800 26558869 ~ 26561251 (-) True G4665
TU5694 lncRNA upstream 220417 26585486 ~ 26586892 (-) True G4660
TU5778 lncRNA upstream 393282 26758351 ~ 26758880 (-) True G4727
TU5803 lncRNA upstream 426089 26791158 ~ 26832411 (-) True G4752
AMCG00003953 mRNA downstream 71012 26281536 ~ 26289404 (-) True AMCG00003953
AMCG00003950 mRNA downstream 103377 26225466 ~ 26257039 (-) True AMCG00003950
AMCG00003951 mRNA downstream 145741 26155543 ~ 26214675 (-) True AMCG00003951
AMCG00003952 mRNA downstream 242892 26086747 ~ 26117524 (-) True AMCG00003952
AMCG00003945 mRNA downstream 344816 26006850 ~ 26015600 (-) True AMCG00003945
AMCG00003960 mRNA upstream 60270 26425339 ~ 26446838 (-) True AMCG00003960
AMCG00003961 mRNA upstream 211067 26576136 ~ 26581454 (-) True AMCG00003961
AMCG00003965 mRNA upstream 259571 26624640 ~ 26633703 (-) True AMCG00003965
AMCG00003966 mRNA upstream 286837 26651906 ~ 26683835 (-) True AMCG00003966
AMCG00003968 mRNA upstream 406225 26771294 ~ 26771916 (-) True AMCG00003968
TU5513 other downstream 458804 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 2064640 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 2064640 24288131 ~ 24295776 (-) False AMCG00003909
TU5014 other downstream 2826534 23529519 ~ 23533882 (-) True AMCG00003893
TU5805 other upstream 500085 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 5944411 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 6042733 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 6228558 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 7767029 34132098 ~ 34135600 (-) True G5801

Expression Profile