RNA id: TU5694


Basic Information

Item Value
RNA id TU5694
length 1387
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G4660
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26533880 ~ 26586892 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcagcatttttattttgtgttgttgcagATGCCAATTTCACATCAGTCAAGTCTCACCATTATTTTGAGACTGTAATGGTAAAGAAGCAACATGAATGACAATAAACACACTAAAGATGTTTTTTCccaataatttattcatttacattaaAGTCAGCTTTTACTCCCTGATCATTCAAACTCAATTACAGaatcacatttattaataaacaatgcaatttatacaaaaaaaataaaataaaccatgggAAAAGATTAAATCACACCAATTTAACATCTGACCTGTTGCAAAATCTTATCCAGTACAGTGTAACTGTTTTTTTACTATAAAGTTCAAAATAGAAAAGGGAGGAAGATTAATATGGTAAATTAACCATAGCTTTGAAATTAGCCATTCATTCTTGACGTTTCAATCATATCTATATACTTGTACTGCAtttaactgtatgtgtgtgaatatgtggatgtatatttatatgtacatacatgtgtgtacatacacacattatgtgtacatacatacacacacacacacacacacacacacacacacatatatatacacacacacacacacgtgtgtgtacacatacatttatatatatatatatatatatataaagtcaaAGCTTGgtctttttgtatttctatatcccatttaaatgtatccattgTGTTTATAATGGGTACCAATGTATTCCCAATTAGCTGTTTATTAACTGCCTAAACAAAACTGATAACAAGAGGACTTTTGTACATTAAAGCAAAATGGACAGCATCCTTTtcttgaaacaaacacaaatcaagaCAGCAAAACGAGCCAAGTTTGTACATCCTTACTCCATGTCCTGACTCCACTGGCAACAAATTGAGGACTTTGATGTTAACTGGTAATGTGTTGTTGCTGATAATGAAAATGTCTCATTGATGGGGAAgagaacagttttaaaaagctgGCAGAGCTGAGATTTCCTGGAAGTGGTGACCCTCATGTTCTCTTGGTAGATAtggggcggggcggggggggttgCTTCGTTCCGTTTCTTccattttcttcctttccttcaGACGGCCCCACTCAGACATCATTGTTATAACTGCATTTCTCTTTGAATGACACCATTTCCATCTTCACCACAGGATGTTAGAGTTTTGGTTGTCTATTGTGGTTTTAACAGCAGAGGCGCAGGATGGAGGCAGAGACGGtcagagggaggaggaggacgatGGTGCTGGACTGCAGGGGGTGTGCTGCTCCCTTTGGGTTGGTGGTGGAGTTCCCTGAGCCCATACTGCTGTAGGTGTTTGCTGTGGTTGTCACGGTACTTACATTCTGGGTGGCGTAGGTCTGGTTGGTTGCTATTGTGGCATTCTGGGAGTTAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5701 lncRNA downstream 24235 26558869 ~ 26561251 (-) True G4665
TU5651 lncRNA downstream 220417 26359857 ~ 26365069 (-) True G4624
TU5652 lncRNA downstream 220417 26360416 ~ 26365069 (-) False G4624
TU5621 lncRNA downstream 305719 26277444 ~ 26279767 (-) True G4602
TU5572 lncRNA downstream 586858 25997435 ~ 25998628 (-) False AMCG00003946
TU5778 lncRNA upstream 171459 26758351 ~ 26758880 (-) True G4727
TU5803 lncRNA upstream 204266 26791158 ~ 26832411 (-) True G4752
TU5838 lncRNA upstream 377868 26964760 ~ 26965399 (-) True G4782
TU5894 lncRNA upstream 1462647 28049539 ~ 28058411 (-) True G4829
TU5906 lncRNA upstream 1517717 28104609 ~ 28104980 (-) True G4838
AMCG00003961 mRNA downstream 4032 26576136 ~ 26581454 (-) True AMCG00003961
AMCG00003960 mRNA downstream 138648 26425339 ~ 26446838 (-) True AMCG00003960
AMCG00003953 mRNA downstream 296082 26281536 ~ 26289404 (-) True AMCG00003953
AMCG00003950 mRNA downstream 328447 26225466 ~ 26257039 (-) True AMCG00003950
AMCG00003951 mRNA downstream 370811 26155543 ~ 26214675 (-) True AMCG00003951
AMCG00003965 mRNA upstream 37748 26624640 ~ 26633703 (-) True AMCG00003965
AMCG00003966 mRNA upstream 65014 26651906 ~ 26683835 (-) True AMCG00003966
AMCG00003968 mRNA upstream 184402 26771294 ~ 26771916 (-) True AMCG00003968
AMCG00003967 mRNA upstream 243462 26830354 ~ 26866943 (-) True AMCG00003967
AMCG00003970 mRNA upstream 353146 26940038 ~ 26957628 (-) True AMCG00003970
TU5513 other downstream 683874 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 2289710 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 2289710 24288131 ~ 24295776 (-) False AMCG00003909
TU5014 other downstream 3051604 23529519 ~ 23533882 (-) True AMCG00003893
TU5805 other upstream 278262 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 5722588 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 5820910 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 6006735 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 7545206 34132098 ~ 34135600 (-) True G5801

Expression Profile