RNA id: TU5778


Basic Information

Item Value
RNA id TU5778
length 530
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G4727
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26758351 ~ 26758880 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgcagggtagccacaaagcgctttacagactggtaaacatacaacaaacgtacagcaaaataaaatacataaatacaataaaataaaatatagacctgtacacattttacatgatctagaataaagtgagtgatcatataagtaaataaaccatttaggcacggaggagagaaaaacaaaaaactcctatggatggcatgtaggagaaaatgaatctctgggggtccacggcttagggcctaggcctaatggttgcctcccctccaggcagtatagttgttacagcagcaaggataTCAAGTtgtttatcggtgctgctggctgtggtcttccctctggaggaggtcTCTCGCTAGCCATCGGGGGTGgaggggttggaccatcaacagactttgggttgcgatggttcgtcagaccttgggtgtggatgccccgttgaccctctgtggtgaggtgcctctggggtgggttgtgcctcatcagacttccatggtgggggatgaggtgcctcgttggaccctcagaggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5695 lncRNA downstream 171459 26533880 ~ 26586892 (-) False G4660
TU5694 lncRNA downstream 171459 26585486 ~ 26586892 (-) True G4660
TU5701 lncRNA downstream 197100 26558869 ~ 26561251 (-) True G4665
TU5651 lncRNA downstream 393282 26359857 ~ 26365069 (-) True G4624
TU5652 lncRNA downstream 393282 26360416 ~ 26365069 (-) False G4624
TU5803 lncRNA upstream 32278 26791158 ~ 26832411 (-) True G4752
TU5838 lncRNA upstream 205880 26964760 ~ 26965399 (-) True G4782
TU5894 lncRNA upstream 1290659 28049539 ~ 28058411 (-) True G4829
TU5906 lncRNA upstream 1345729 28104609 ~ 28104980 (-) True G4838
TU5988 lncRNA upstream 1609119 28367999 ~ 28369982 (-) True G4900
AMCG00003966 mRNA downstream 74516 26651906 ~ 26683835 (-) True AMCG00003966
AMCG00003965 mRNA downstream 124648 26624640 ~ 26633703 (-) True AMCG00003965
AMCG00003961 mRNA downstream 176897 26576136 ~ 26581454 (-) True AMCG00003961
AMCG00003960 mRNA downstream 311513 26425339 ~ 26446838 (-) True AMCG00003960
AMCG00003953 mRNA downstream 468947 26281536 ~ 26289404 (-) True AMCG00003953
AMCG00003968 mRNA upstream 12414 26771294 ~ 26771916 (-) True AMCG00003968
AMCG00003967 mRNA upstream 71474 26830354 ~ 26866943 (-) True AMCG00003967
AMCG00003970 mRNA upstream 181158 26940038 ~ 26957628 (-) True AMCG00003970
AMCG00003974 mRNA upstream 206842 26965722 ~ 26968015 (-) True AMCG00003974
AMCG00003975 mRNA upstream 247093 27005973 ~ 27040898 (-) True AMCG00003975
TU5513 other downstream 856739 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 2462575 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 2462575 24288131 ~ 24295776 (-) False AMCG00003909
TU5014 other downstream 3224469 23529519 ~ 23533882 (-) True AMCG00003893
TU5805 other upstream 106274 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 5550600 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 5648922 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 5834747 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 7373218 34132098 ~ 34135600 (-) True G5801

Expression Profile