RNA id: TU5838


Basic Information

Item Value
RNA id TU5838
length 640
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G4782
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26964760 ~ 26965399 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attattattattattattattattaattcaatatcACTTCCAAAGTAATTATATAGGCATTCTGCATGGATAACTTAATTACtcttcaaatatcaaatatttttataacCAACAGGCTATAACTGATCAAACATTATGATCATTCCACATTTACCAATACTATCtcagcatatttatttatttcagtttatgtAGTCTGTACTGGTAAGAAACAGAccacatattaatatataaccCATTTGCCATCCATGGACTGCTTGGTTTATACTGTGCTATATTGGATGTGTTCCTGCAATCTGAGATTTCAGTGCATTGCAATATTCTAGTTATATTTCTTATGAGTGTGGAAACCATATAGTAGgttattcaaacaaaaaatgttttggagaaAATGAAGTGCATTTGACTTTTCTACAAACCTGCAAAGATAACCAGGATAAATCATACCAGGGGctgcattttaatatcactttaactTTCAAAATAGAGAAAAGATTCACTTTTATTTTGCCAACAAGCAATCTTAAATAtgatgtgtaataaataaatgcaggcAGATGGTTTGGGAAAATGTTCCAGTGCAATATCAATTAGTGAATTGGGTAAATCCAGTGAATGTGTTTGCATACTGTGTCAAAGt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5803 lncRNA downstream 132349 26791158 ~ 26832411 (-) True G4752
TU5778 lncRNA downstream 205880 26758351 ~ 26758880 (-) True G4727
TU5695 lncRNA downstream 377868 26533880 ~ 26586892 (-) False G4660
TU5694 lncRNA downstream 377868 26585486 ~ 26586892 (-) True G4660
TU5701 lncRNA downstream 403509 26558869 ~ 26561251 (-) True G4665
TU5894 lncRNA upstream 1084140 28049539 ~ 28058411 (-) True G4829
TU5906 lncRNA upstream 1139210 28104609 ~ 28104980 (-) True G4838
TU5988 lncRNA upstream 1402600 28367999 ~ 28369982 (-) True G4900
TU6011 lncRNA upstream 1504175 28469574 ~ 28469852 (-) True G4921
TU6012 lncRNA upstream 1504791 28470190 ~ 28470417 (-) True G4922
AMCG00003970 mRNA downstream 7132 26940038 ~ 26957628 (-) True AMCG00003970
AMCG00003967 mRNA downstream 97817 26830354 ~ 26866943 (-) True AMCG00003967
AMCG00003968 mRNA downstream 192844 26771294 ~ 26771916 (-) True AMCG00003968
AMCG00003966 mRNA downstream 280925 26651906 ~ 26683835 (-) True AMCG00003966
AMCG00003965 mRNA downstream 331057 26624640 ~ 26633703 (-) True AMCG00003965
AMCG00003974 mRNA upstream 323 26965722 ~ 26968015 (-) True AMCG00003974
AMCG00003975 mRNA upstream 40574 27005973 ~ 27040898 (-) True AMCG00003975
AMCG00003976 mRNA upstream 269920 27235319 ~ 27254865 (-) True AMCG00003976
AMCG00003979 mRNA upstream 667681 27633080 ~ 27635364 (-) True AMCG00003979
AMCG00003978 mRNA upstream 1033434 27998833 ~ 28041357 (-) True AMCG00003978
TU5805 other downstream 95182 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 1063148 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 2668984 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 2668984 24288131 ~ 24295776 (-) False AMCG00003909
TU5014 other downstream 3430878 23529519 ~ 23533882 (-) True AMCG00003893
TU6736 other upstream 5344081 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 5442403 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 5628228 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 7166699 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 7926502 34891901 ~ 34892613 (-) True G5871

Expression Profile