RNA id: TU5905


Basic Information

Item Value
RNA id TU5905
length 1498
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G4837
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28104210 ~ 28105707 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcacttcacctgtcagtggtcataatgttatggctgatcggtgtataaatatatactagaTAACTGCACGGTTGTCCACATTAGGTCAAACCTCAATTCCtaaataatattagtagtaataataataaataatataaaatgtcactTATCCttaaaagaaatagaaatgaaagaataatggagaaaatgttaaatgaagCTCCACAGAGCACTTGCCCTAGTGATGTATCATTAGTTTTATTGTATATGCCTTAACGTAgccaaaatcaaatatttattatttttttaaaattaacttaattgtttagagaaatgtattctattttattcaaggaaaatgtatgttgttCTTATCAGATCATTTGTATTATGAGCAGTTTAATCTTGTCATATATTTGACTGGACTTGGTTTTCATCACAATGGTAGATGTATGAAAGGAACGCGTAAAGTCAATTCAAATGTGCATCTAATTTCATAATTCAACTAGAGAGCCTATGAAGAGAATAAGATGGTTTTTATAACAGAGCGATATTAACCTGGCTTGGTTTACCACAGTATACcattctctcagtctctctctctcctctaacaaacatgaaaataaatccctGTTTGCTTGCGAATGCTCTACCACTGTAGTGAGacgtgttgttttttcctgcttctaaagCATACCCTGCCTTACTGCCTAGTGATTGGCTGAGAGCATACAGCATTATTTGACAATTGTGGCTCACATCTTTGTGCACAAGCGCAGTGGATCACTCAAACTGGAGGTTCTGTGAAGAAAATCACCTGTGCACCGTTGCCAAATAGGACCTGATGTTTTAAACGTTTACTGGCTGATCAACAGTGTGACTGTGGTATTAAGACCAAGTCAAAATGCTGCGTGTGGTGAAATAGAGTATTTATACTGGAGCCCAAAGCAAAGACCGTACCCCtttgtttactgtgatttatGGCAAAAGTGACTGACCTGTCTGCATTTTAACATAAACTcagtaatcatgttttgtgtaacaatattttgtttcaattatgtaattttgattttgtgttcaGAATAAAAATGACAGATAACAGTTCATCCTGTTTGTCTTCAAGTTGGAACAAAGCactgattgcttttttttttgcatatcacattttataacctaattttaaatgtattgcctttttgtttctgtgaatcATGAATTTCATGAGGTCTTAAAAGTTTTACTTGATTGAAATAAACCTATTATATtggaattttaaaaagtgttctttactttcttctttttcatcaCCACACTCTGATCACTTATTTTCATAGCCTGTAATCCACTGGGGTccatataatattgcattttaaaggcCTTTCTCTTGCACAAGAATGCCTTCCACGAGCAATAATTAAGCaataactaaatatgtatttttctttctctttataacACTGAGCAAGTTTTAATTCATGaacatattaaacatgtattacaaTATACTATGGCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5870 lncRNA upstream 326551 27777290 ~ 27777659 (+) True G4808
TU5868 lncRNA upstream 327768 27721460 ~ 27776442 (+) True G4806
TU5865 lncRNA upstream 520176 27583571 ~ 27584034 (+) True G4804
TU5845 lncRNA upstream 821969 27282004 ~ 27282241 (+) True G4787
TU5732 lncRNA upstream 1452643 26651285 ~ 26651567 (+) True G4694
TU5991 lncRNA downstream 293156 28398863 ~ 28399688 (+) False AMCG00003988
TU6005 lncRNA downstream 348726 28454433 ~ 28464850 (+) False AMCG00003990
TU6007 lncRNA downstream 361210 28466917 ~ 28468944 (+) True G4917
TU6014 lncRNA downstream 462477 28568184 ~ 28576934 (+) False AMCG00003991
TU6060 lncRNA downstream 558795 28664502 ~ 28664710 (+) False AMCG00003993
AMCG00003982 mRNA upstream 5884 28098060 ~ 28098326 (+) True AMCG00003982
AMCG00003980 mRNA upstream 9608 28062555 ~ 28094602 (+) True AMCG00003980
AMCG00003973 mRNA upstream 598061 27492506 ~ 27506149 (+) True AMCG00003973
AMCG00003972 mRNA upstream 654316 27430090 ~ 27449894 (+) True AMCG00003972
AMCG00003977 mRNA upstream 722208 27380559 ~ 27382002 (+) True AMCG00003977
AMCG00003983 mRNA downstream 153989 28259696 ~ 28275388 (+) True AMCG00003983
AMCG00003985 mRNA downstream 248808 28354515 ~ 28369974 (+) True AMCG00003985
AMCG00003989 mRNA downstream 267439 28373146 ~ 28379173 (+) True AMCG00003989
AMCG00003988 mRNA downstream 274104 28379811 ~ 28399741 (+) True AMCG00003988
AMCG00003990 mRNA downstream 348712 28454419 ~ 28465646 (+) True AMCG00003990
TU5898 other upstream 999 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 36424 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 2308419 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 3420290 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 4391076 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 2165503 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2782288 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 5024413 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6747156 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7646826 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile