RNA id: TU6007


Basic Information

Item Value
RNA id TU6007
length 2028
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G4917
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28466917 ~ 28468944 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attgttctatataaaatccctgggataaggcaccccgcatttaagatttattaagaCTATTGTAgtgccagctatttttaaacttacatgtacaaataatttaaatgtcaatgcttattcttacattttttaaattacttttttttctctctctctccttaaaAGTTTCCAGTCCTTTTGTGATCCTCTTGATATAAGAAGTCTACCATTTATTATCGGCCGGCAAAGTCATGTGATGTCTGTTGCCATTGGCATGTTTGGAATAATTTATGTGGACATAAAAGGGATTGTCTGATTTACCATGAACCACTTAGGATTTGTAGAATTTGAGGAAGGAAAggaaatattcaattttttgcCTTAAGGGTTTGTGCTAACTATGAAGTCACGTTCTGGATTTATGCCTGGgtttttgccatttttaaaaataaatattttaattatttgtgcctgctaaaaaataaaggtaatttaTTTGGTGAGACCTGGACTTTaccacattcaaatatattaatctcTTATTTAAACCAGTAGGTGGAGATAGTGTAGAAGCTGGCAACCTAAAGAAAACTTAAAACCAGCtcacagaaatgtgaaaacCCTGAAGAAACGTCTTGTAGGTGTAtatgtttgtctgtgtatttacatgtatatatttatgtatcttttcCTTGATATATATTAAGCAGGTTGTAGCAatttagatatattttgcaTAGGTTAGGCATAATggaacagaaattaaattgtcAATTTATTTCAACTGGGAATTTAAGGCCATATCTGAGTTTAGTAATAGATGGCTTTTGGTAAATGTCAGTTTTGCTGAATATTGtaagacagaaaaacaagttttaaatcAGATAATTTTCCTTCTACATATCAGATAAGTTgatattaattttacttttcagCTGAAGTGCCAATGTAAGAATGCATAAAATAAGTGCTGCTTATTCAGCTTTTACTAGTGAATTGGTTTTACTTTATGATTATGTTATGATTATACACTTTCAACTGCTAAACCTTTCTTCAGTcaggtatatattttatacttctGTGTATAGGCTGTTATCCCATTTCCATGCCCTGCCTGTTTTGTGATTTCAAGTTCTGTACATTAGCTACCAAGATGATAAGCAGGGTTCTCcatatttttcttaatcttttttAGGATAATTAAATTGGTGTATTGAAATGTTCACCCTACTCTGTACAAATCTCCTTTTGAAATACACTTGAAATTGCAGtgtgatttttacttttttactttttacttttactttttgtacCTGGTAAATGTAATACTTATTTCTGTGAccataaaatcaaaaacatttattttagaacagCACTAGATTCACATAAAGGCCATTAGTTGAAACTTTTGAGTTGAAATACACTACAGTGAAGGGGAAGAAAGGttcaaattagctttttttttatttaatgtggtgTTCTCTTTTTATGATGCAAGATTTTTCTCTTCTGAGTGCTTGTTGCTAATATAACTGACTATAAAAGTTGAGTGGAAACTTTTCTGTTTCTCAGCTGTCCTGCAGTTcagtgatttcttttttcttttttcaatttggCAAAATGAACACTGTTAGGTGAAGAGGAGAGTAGGTATGACACAATAATTCAGTTTgatctttttaatttcttcagaaTACACTTTTTCcatcatataaaaatgtgtttattagtGTGCCAGGTTTTTGCATAAAGGCTTGTATGAAAAAGTGATTTCTTAGCAACGATGGTATTCATCAATAATTGTTAACAGTAAGGTTCTTTAGAAAGATTCTTTTGAATTTAGTTGAGAGGCAATGAGCTCACATTgaatcaataatttaattgatttataatgaCGTTTGACCAACTGCATTAGAAACCATTTCACCAATAAACAAAGCAAGTACTTGTAAAAAGTCAGATCTTGTAACAAATGTTTTGGAAATTGAGGGGAAagtggaaaatgtttgttttattcactCACTGGAAGGTCATAATAGTACATGAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6005 lncRNA upstream 2067 28454433 ~ 28464850 (+) False AMCG00003990
TU5991 lncRNA upstream 67229 28398863 ~ 28399688 (+) False AMCG00003988
TU5905 lncRNA upstream 361210 28104210 ~ 28105707 (+) True G4837
TU5870 lncRNA upstream 689258 27777290 ~ 27777659 (+) True G4808
TU5868 lncRNA upstream 690475 27721460 ~ 27776442 (+) True G4806
TU6014 lncRNA downstream 99240 28568184 ~ 28576934 (+) False AMCG00003991
TU6060 lncRNA downstream 195558 28664502 ~ 28664710 (+) False AMCG00003993
TU6083 lncRNA downstream 423740 28892684 ~ 28893031 (+) True G4981
TU6107 lncRNA downstream 483609 28952553 ~ 28953065 (+) True G5005
TU6212 lncRNA downstream 885577 29354521 ~ 29361679 (+) True G5085
AMCG00003990 mRNA upstream 1271 28454419 ~ 28465646 (+) True AMCG00003990
AMCG00003988 mRNA upstream 67176 28379811 ~ 28399741 (+) True AMCG00003988
AMCG00003989 mRNA upstream 87744 28373146 ~ 28379173 (+) True AMCG00003989
AMCG00003985 mRNA upstream 96943 28354515 ~ 28369974 (+) True AMCG00003985
AMCG00003983 mRNA upstream 191529 28259696 ~ 28275388 (+) True AMCG00003983
AMCG00003991 mRNA downstream 99881 28568825 ~ 28585674 (+) True AMCG00003991
AMCG00003992 mRNA downstream 118887 28587831 ~ 28591593 (+) True AMCG00003992
AMCG00003993 mRNA downstream 171230 28640174 ~ 28683981 (+) True AMCG00003993
AMCG00003994 mRNA downstream 220944 28689888 ~ 28698767 (+) True AMCG00003994
AMCG00003998 mRNA downstream 248838 28717782 ~ 28731033 (+) True AMCG00003998
TU5898 other upstream 363706 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 399131 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 2671126 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 3782997 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 4753783 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1802266 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2419051 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4661176 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6383919 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7283589 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile