RNA id: TU6083


Basic Information

Item Value
RNA id TU6083
length 348
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G4981
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28892684 ~ 28893031 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaattgaaatcccccattataacagccacatccttgctacatgcagtcctgattacactgtacaatgcagcatctttctgaatatctgagtttggtggcctgtaatacactcctaccgctaatcctccagatctcttgatcaaaagtttcacccacaaagattctgttccgttactgggatctaatacaagttcttctgcctcaatgtcatttttcacatataatgctaccccaccccctcttcgattttgcctgtctctcctaaactgtgtgtatccttccaacttgtattcatccccatcattttctgtaagccatgtttctgtcactcctacaacatcatagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6060 lncRNA upstream 227974 28664502 ~ 28664710 (+) False AMCG00003993
TU6014 lncRNA upstream 315750 28568184 ~ 28576934 (+) False AMCG00003991
TU6007 lncRNA upstream 423740 28466917 ~ 28468944 (+) True G4917
TU6005 lncRNA upstream 427834 28454433 ~ 28464850 (+) False AMCG00003990
TU5991 lncRNA upstream 492996 28398863 ~ 28399688 (+) False AMCG00003988
TU6107 lncRNA downstream 59522 28952553 ~ 28953065 (+) True G5005
TU6212 lncRNA downstream 461490 29354521 ~ 29361679 (+) True G5085
TU6230 lncRNA downstream 646182 29539213 ~ 29541316 (+) False AMCG00004011
TU6278 lncRNA downstream 791196 29684227 ~ 29685543 (+) True G5129
TU6294 lncRNA downstream 804636 29697667 ~ 29699224 (+) True G5141
AMCG00003999 mRNA upstream 140686 28731909 ~ 28751998 (+) True AMCG00003999
AMCG00003998 mRNA upstream 161651 28717782 ~ 28731033 (+) True AMCG00003998
AMCG00003994 mRNA upstream 193917 28689888 ~ 28698767 (+) True AMCG00003994
AMCG00003993 mRNA upstream 208703 28640174 ~ 28683981 (+) True AMCG00003993
AMCG00003992 mRNA upstream 301091 28587831 ~ 28591593 (+) True AMCG00003992
AMCG00004003 mRNA downstream 189062 29082093 ~ 29108404 (+) True AMCG00004003
AMCG00004009 mRNA downstream 249731 29142762 ~ 29184704 (+) True AMCG00004009
AMCG00004007 mRNA downstream 366929 29259960 ~ 29265240 (+) True AMCG00004007
AMCG00004008 mRNA downstream 412173 29305204 ~ 29321613 (+) True AMCG00004008
AMCG00004010 mRNA downstream 487552 29380583 ~ 29391128 (+) True AMCG00004010
TU5898 other upstream 789473 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 824898 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 3096893 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 4208764 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 5179550 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1378179 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 1994964 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4237089 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 5959832 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 6859502 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile