RNA id: TU609


Basic Information

Item Value
RNA id TU609
length 2030
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G500
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 3195905 ~ 3211877 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCCTTTCCATTTCACATAAGGGATTTTATCAATATTAGTTCATACCCTAAAAAATATCATTCCAAGACAACTTTCCAAACAGAAACAACTCAATGTTGTTCTTGTAAAAACAGTTGTTTTCCAAAAGGATAGAAGCACACAGGGAAGGACACTGAATAAAGATCAACTCACAAACATAGGAGAAATGAAGCACAATGAAGCGGATGATCTGGGATCTGAAAATTTTGACCCAAAATACACCTAAATCAAAGGTACAAAAACTTCTCTCTGATCCCTGatctgtgacatttaaaatcatacatCAGATTAGATGTAACAGACCCAACACAATATAATGGCATGGCATcaaataattgttattgttgaatataaaaaataaaactaagatACAGGCATTCTGTTCTTTATGCAATGATACACGTTTCACCTAGATATATGAAGTTGGTTTAACAGGAAATGTATTACTAATAGGCCATTTcacatttgctttgtttgagtaaccaaaagtgcaaaaatgatttttgtacaataatttgtaaaatataaaatctgatCTGACAGTGTAGCTTAGTATCCGATGTGATGGTTTGTAACACTTTTTATAATAGCCAAATGTCATACAATACAAGCAGGTGGTCAATGGCGTCAACAGTGAAAGACCTcaacagggagagaaaaaaaaaatggccctttaaataaatgaacataaaatcagtacagtgtgaGTAACAAACCACACAATGAGAGCAAGGCAAGGAGACACATTCTCATGCTgcccaatcaatcaattaaccaTCAGCAGTCTGACACAAGTCCACCAATCAGGAGCCCCTGCTACAACACATAATAAATAAGGGCTACACCTAATAATAAGGCTACATCTACCACAGTTATCAGtaatctatataataataatttagagatatttctatactggaaaataaaaatagtttgtcAGTACCTTTATGCCTTTGTGAGGTGTACTTTTGTACTGATTCACAATTCTGTTCAGCTCCTCCTTATATTGTTGGTATCCCCCTGGTCTAATGAAGATGCCTTCATTCACCTTTGTCTCCATTTCGGTGTAGAGTTGCTGCAGTAGGGCAAGGCTGCGCTTTTTGGATTCTTCTTCATTTTTACAACAAATTGATTTATATTCTTCAACCACAGCCATCTGGGAAAAGGACATGAAGATTGCCAGTTATTGAGCATAACACGGCCTAAAAgacaaatcagtgttttttggtcATCAAAtccaaacataaaataatacattatctaCATGGTTATATaattaagctttcaaattaCAGTTAAACCTTTatttgtggttgtggttgtttttatttcttgtaaatTGTTGCtggaaaatgtcatgttttttggATGTACTGACCAAAACTGAAGGAAAGCATAGCCATATAGGAGAGTATGGCTCTCTCAAATTTGTGTTTACATCATATATGTTATGTGGTACACagatattttctgttaaaagaaaacatccccACCGCTAGTTCTTCCTGATGCTTATGATCTTTGTCCTTGAAGGATCGCTTCATGAACAGTTCAAGAGCCTCTTTCTCATATTTCCCATGTAGATCAGAGAGTTCTTCAGTGGTGTCTGTGGGCAAGGAGACATCCTGACTCATCTTCTCCTTGTAGTAAGAGAGTGAGTTCAGGACTGCAGCAGAGTTCTCAATCTGAGCCAGAGCAGAGACCGCGTTCTCCAGGCAGGGCACTGTCCCACTGTTAATTGCGTCCATGTATATCACAACGAGGTGTCCTAACATTTGCCAGTTGCTGTGATCCCCTCTTTAATCGTTTTTATTTTGGCctcattatatatgtattggcAGAATTCTTTTGCTTGCTGCACAAAATCAGCATTTAGATCACTGTCAGAAAGCTCCTctattttccacattttcctTGGGGACGTAGGCTGgtcaaaaacaaagcatttccGTGTTGGGAAGTATTTCCTGATACATTCACGTGGCAAGTTGAATCGATCGATCCTCTCTG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU568 lncRNA downstream 84854 3086465 ~ 3111051 (-) True G464
TU557 lncRNA downstream 137701 3006968 ~ 3058204 (-) True G458
TU547 lncRNA downstream 190224 3005372 ~ 3005681 (-) True G453
TU451 lncRNA downstream 789821 2405643 ~ 2406084 (-) True G372
TU410 lncRNA downstream 848496 2347062 ~ 2347409 (-) True G345
TU653 lncRNA upstream 212211 3424088 ~ 3428291 (-) True G541
TU697 lncRNA upstream 312147 3524024 ~ 3525095 (-) True G578
TU698 lncRNA upstream 324892 3536769 ~ 3537887 (-) False AMCG00003444
TU706 lncRNA upstream 385044 3596921 ~ 3599589 (-) True G586
TU746 lncRNA upstream 651120 3862997 ~ 3865429 (-) True G624
AMCG00003431 mRNA downstream 469986 2674158 ~ 2725919 (-) True AMCG00003431
AMCG00003426 mRNA downstream 672580 2507558 ~ 2523325 (-) True AMCG00003426
AMCG00003422 mRNA downstream 757344 2427397 ~ 2438561 (-) True AMCG00003422
AMCG00003424 mRNA downstream 779954 2408054 ~ 2415951 (-) True AMCG00003424
AMCG00003423 mRNA downstream 794347 2397776 ~ 2401558 (-) False AMCG00003423
AMCG00003435 mRNA upstream 1934 3213811 ~ 3217086 (-) True AMCG00003435
AMCG00003437 mRNA upstream 28007 3239884 ~ 3250722 (-) True AMCG00003437
AMCG00003436 mRNA upstream 78160 3290037 ~ 3291227 (-) True AMCG00003436
AMCG00003440 mRNA upstream 186849 3398726 ~ 3400684 (-) True AMCG00003440
AMCG00003439 mRNA upstream 193093 3404970 ~ 3415285 (-) True AMCG00003439
TU462 other downstream 757084 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 794010 2397642 ~ 2401895 (-) False AMCG00003423
TU643 other upstream 182780 3394657 ~ 3430272 (-) True G531
TU920 other upstream 1438894 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 2133962 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 7739299 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 7891449 11103326 ~ 11104672 (-) False AMCG00003595

Expression Profile