RNA id: TU6727


Basic Information

Item Value
RNA id TU6727
length 223
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G5494
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32191320 ~ 32191542 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattcatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007399 nervous system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6724 lncRNA downstream 161914 32028953 ~ 32029406 (-) True G5491
TU6716 lncRNA downstream 404376 31786334 ~ 31786944 (-) True G5483
TU6709 lncRNA downstream 519741 31671363 ~ 31671579 (-) True G5476
TU6700 lncRNA downstream 656941 31533947 ~ 31534379 (-) True G5467
TU6698 lncRNA downstream 804287 31386584 ~ 31387033 (-) True G5465
TU6734 lncRNA upstream 77163 32268705 ~ 32269226 (-) True G5500
TU6772 lncRNA upstream 191867 32383409 ~ 32383683 (-) True G5528
TU6781 lncRNA upstream 196204 32387746 ~ 32388969 (-) True G5536
TU6785 lncRNA upstream 200341 32391883 ~ 32392110 (-) True G5539
TU6801 lncRNA upstream 336141 32527683 ~ 32529838 (-) True G5552
AMCG00004073 mRNA downstream 623305 31558683 ~ 31568015 (-) True AMCG00004073
AMCG00004074 mRNA downstream 651913 31537908 ~ 31539407 (-) True AMCG00004074
AMCG00004072 mRNA downstream 870726 31319595 ~ 31320594 (-) True AMCG00004072
AMCG00004070 mRNA downstream 1100013 31076913 ~ 31091307 (-) True AMCG00004070
AMCG00004069 mRNA downstream 1115647 31067311 ~ 31075673 (-) True AMCG00004069
AMCG00004077 mRNA upstream 139784 32331326 ~ 32333781 (-) True AMCG00004077
AMCG00004076 mRNA upstream 158411 32349953 ~ 32363126 (-) True AMCG00004076
AMCG00004091 mRNA upstream 421554 32613096 ~ 32650701 (-) True AMCG00004091
AMCG00004090 mRNA upstream 472122 32663664 ~ 32671871 (-) True AMCG00004090
AMCG00004094 mRNA upstream 771498 32963040 ~ 32974811 (-) True AMCG00004094
TU5805 other downstream 5321742 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 6289708 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 7895544 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 7895544 24288131 ~ 24295776 (-) False AMCG00003909
TU5015 other downstream 8657438 23529519 ~ 23533882 (-) False AMCG00003893
TU6736 other upstream 117938 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 216260 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 402085 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 1940556 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 2700359 34891901 ~ 34892613 (-) True G5871

Expression Profile