RNA id: TU6781


Basic Information

Item Value
RNA id TU6781
length 1224
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G5536
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32387746 ~ 32388969 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGCCTGTATcttgagttttttgttttgtttttggatttatCCAACTCAAAGGTTGTTAAAGAGGTATCTATAAGGGTTAAACGGACAGACTTGGCTGTTCTATAGGTCCTCTTGAGTCTCAGTGTCTGCAGCTTGTGTGGAGAATTGATGGTTTTATGCccagtttcatgcattttaataatgtatttgtttttgtatgggGGGTGTGTTACAGGGAGCAGGAGACAGCTTCATCGGAGCCTTGGCCTTTTACATGGCACATTATCCCACAGTGCCTCTGGAGGAAATGGCCAGGAGAGCCAATCTGGTTGCAGCAGTGAGCGTGCAGAGCACAGGCACTCAGACGTCTTACCCCTTCAGAAAGGACCTGCCTGCAGAGCTCTTCTAGacctgagacacacacatatatggtGGGCACTCCTTGACTTCGACCATGTTTAGTTTCCATTCATCCATAACTCAACACAGACCGTAACAGAGATGAATCCTGATCACACACACCCCTATGTCTATATACAGCAACCCATGAGCACCACCAAActttaatacagacacacaaacttgTAAATATTCTTACTGTCATACATCATGCATCATCAATGGTAATTCATCCACAAGATAATCACAATCCCCATACTGTACTGCAAACCTCTTCTCTTCCCTCGCTCCTTAATTAATCCATGAGGGGGTTTTTCCAAGAaagctgtgtttgtgtaaaacaaGATTAATCGTTTCTCAAGTAACTGTAACTGTGTGCTGGTTAATAACAGTGCAAGCCATTTCTTTTCAAACACCAATGTCTTACAAAACCTACCTGGATATTACCACCTCACTTTTACAAAGGGAATTAGAGAGCTGCTGTGTTGATGTAAGGCAGGAGTGACTGTTCCTTTTGTCAACACCCTGCTGGGTGTTAAACCCACACATATAACACAGTCTGTCATCCTCACAGGTGTATGAAAGCACTGGGACAAAGCAACATGTTATTAGTCTTTTCTGCAGTACACATTGAGTACTTAActaaaattgggggaaaaagaggGCAAGGCAAGGGGAAAGAACTAAGTAATAAGTTAGTATGTTCAAGAAGAATGCCTATCAACGGAAGATTATATAAAAGGATTTTGTTATTAAACGGTAATTAATTCAAGTGGGCAGAGagcaatgtgtttaaataaagacCGTGacattgcatttgtttctgtttgaagAGTTATGAACT

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6772 lncRNA downstream 4063 32383409 ~ 32383683 (-) True G5528
TU6734 lncRNA downstream 118520 32268705 ~ 32269226 (-) True G5500
TU6727 lncRNA downstream 196204 32191320 ~ 32191542 (-) True G5494
TU6724 lncRNA downstream 358340 32028953 ~ 32029406 (-) True G5491
TU6716 lncRNA downstream 600802 31786334 ~ 31786944 (-) True G5483
TU6785 lncRNA upstream 2914 32391883 ~ 32392110 (-) True G5539
TU6801 lncRNA upstream 138714 32527683 ~ 32529838 (-) True G5552
TU6804 lncRNA upstream 156408 32545377 ~ 32547006 (-) True G5555
TU6820 lncRNA upstream 215919 32604888 ~ 32611344 (-) True G5570
TU6922 lncRNA upstream 715756 33104725 ~ 33105215 (-) True G5645
AMCG00004076 mRNA downstream 24620 32349953 ~ 32363126 (-) True AMCG00004076
AMCG00004077 mRNA downstream 53965 32331326 ~ 32333781 (-) True AMCG00004077
AMCG00004073 mRNA downstream 819731 31558683 ~ 31568015 (-) True AMCG00004073
AMCG00004074 mRNA downstream 848339 31537908 ~ 31539407 (-) True AMCG00004074
AMCG00004072 mRNA downstream 1067152 31319595 ~ 31320594 (-) True AMCG00004072
AMCG00004091 mRNA upstream 224127 32613096 ~ 32650701 (-) True AMCG00004091
AMCG00004090 mRNA upstream 274695 32663664 ~ 32671871 (-) True AMCG00004090
AMCG00004094 mRNA upstream 574071 32963040 ~ 32974811 (-) True AMCG00004094
AMCG00004095 mRNA upstream 593494 32982463 ~ 32985504 (-) True AMCG00004095
AMCG00004096 mRNA upstream 625559 33014528 ~ 33022148 (-) True AMCG00004096
TU6736 other downstream 77836 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 5518168 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 6486134 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 8091970 24263907 ~ 24295776 (-) False AMCG00003909
TU6786 other upstream 18833 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 204658 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 1743129 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 2502932 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 2571991 34960960 ~ 34963839 (-) False AMCG00004132

Expression Profile