RNA id: TU6786


Basic Information

Item Value
RNA id TU6786
length 636
RNA type TUCP
GC content 0.56
exon number 7
gene id G5540
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32407802 ~ 32426563 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTACTGACCCTAGTGCACTTTGTACAGTACACGTTACTGTCTACAGCTGCAAGACAGACCCAGAATCGAGTCAGTGAGAGGAAAGCATGTCCGCAGGCAGTGAGGCTGGGGGGGGCTATGATGTAGTGGTAGTGGGCTCCTGTATGACTGACCTTGTGAGCCGGGCCCCGCGCTTACCCCAGGCTGGAGAGACCATCCACGGGGACCAGTTCTTCATTGGCTTTGGAGGCAAAGGAGCCAACCAGTGCATCCAGGCAGCACGACTGGGGGCTAGAACTGCCATGGTGTGCAAGGTGGGAAAAGACTTATTTGGAGACAACTATATTGAAAACTTCAAGAGCAGTGGTGTGTCCACAGagtttgttggacagacagacagagctgcTACAGGCACCGCTTCGATCATTGTCAACAAGGAAGGAGAGAACGCCATCGTGATCGTGGCTGGGGCCAATCTGCTGCTGGGCAGGGAGGAGCTGAGCGCAGCAGGACCGGCTATGACGGGGGGACGGGTACTGGCCTGCCAGCTGGAGATaagcccctctgtctctctccaggctCTGCGTACAGCTCACAGGAAGGGagGAAAGCACTGTGACGTCAGAGTGCAACCCATCACCACCTCAGCCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6785 lncRNA downstream 15692 32391883 ~ 32392110 (-) True G5539
TU6781 lncRNA downstream 18833 32387746 ~ 32388969 (-) True G5536
TU6772 lncRNA downstream 24119 32383409 ~ 32383683 (-) True G5528
TU6734 lncRNA downstream 138576 32268705 ~ 32269226 (-) True G5500
TU6727 lncRNA downstream 216260 32191320 ~ 32191542 (-) True G5494
TU6801 lncRNA upstream 101120 32527683 ~ 32529838 (-) True G5552
TU6804 lncRNA upstream 118814 32545377 ~ 32547006 (-) True G5555
TU6820 lncRNA upstream 178325 32604888 ~ 32611344 (-) True G5570
TU6922 lncRNA upstream 678162 33104725 ~ 33105215 (-) True G5645
TU6983 lncRNA upstream 1139610 33566173 ~ 33567325 (-) False AMCG00004102
AMCG00004076 mRNA downstream 44676 32349953 ~ 32363126 (-) True AMCG00004076
AMCG00004077 mRNA downstream 74021 32331326 ~ 32333781 (-) True AMCG00004077
AMCG00004073 mRNA downstream 839787 31558683 ~ 31568015 (-) True AMCG00004073
AMCG00004074 mRNA downstream 868395 31537908 ~ 31539407 (-) True AMCG00004074
AMCG00004072 mRNA downstream 1087208 31319595 ~ 31320594 (-) True AMCG00004072
AMCG00004091 mRNA upstream 186533 32613096 ~ 32650701 (-) True AMCG00004091
AMCG00004090 mRNA upstream 237101 32663664 ~ 32671871 (-) True AMCG00004090
AMCG00004094 mRNA upstream 536477 32963040 ~ 32974811 (-) True AMCG00004094
AMCG00004095 mRNA upstream 555900 32982463 ~ 32985504 (-) True AMCG00004095
AMCG00004096 mRNA upstream 587965 33014528 ~ 33022148 (-) True AMCG00004096
TU6736 other downstream 97892 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 5538224 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 6506190 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 8112026 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 8112026 24288131 ~ 24295776 (-) False AMCG00003909
TU6815 other upstream 167064 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 1705535 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 2465338 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 2534397 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 2928058 35354621 ~ 35414446 (-) False AMCG00004143

Expression Profile