RNA id: TU6801


Basic Information

Item Value
RNA id TU6801
length 2104
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G5552
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32527683 ~ 32529838 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttattaaaagactTGATGCTAATAAATGCCCCAGTTACATTCACCCTTTAGTTCCCAATTAAACATGACAGTTCCTGCATTACGAACAATAAATATAGCACAGGGCTGGCCCAAAGGCCAAGCAAGACCCCTGACAATGACCCTCATCCTTAATGATGGAAATAAGCACGCACACACcactccccccacacacacgcatgcatgcacacacacacacacacacacgacaacATCTGCTTAGCTGCATAAACACACAGTCCTTGTCCTCAATTAAAAGCTAGTTTCATATTTCTAGGCTCTGTGTAAAAATCCAAAGTTGCCTCTTATTCTATGGCACGGTTATgatgttatgttcttatgtggcTGCACAGGCACGGGCACAGTTCACAACAGCTGCGTTCACTGTGGCATCGGCACTCACAATTCGGCAAGACCTGTTTCAGCTACCAATGGCATATCAGTGCAGGTCATCTTTCAGTGAAGACCTCTTCAGTGTAGTTCATCAAGAGAGCATACATACTCCAAATTCTGATCTGAACTAAATTTGTGGAGGACAATATTAAGCATGTGGGTTATCTATTTACTTTGGATTATCAAAGCATGACgagcccccctgccccccaacaAAAACCACGATAGGCACAAAAATACTTGTGTGTCTCTCGTTGTCCGCTGTCGTTACGCAATGCCGTTCTTCTGAATACATGCTATGGGCttcacaatattaatattattgtattgtatgtaacTCTTGCCGTTTTCAGGAGAATGTTGGGGGGGGGAACTATTGTCCTTTGCAAATCTCTGCTcacttgctgttgctgtttggTCTCTACAAAGCTAGGATCTGCATGGCATTATCCTATGGTTCATGTGTTTCACTGTAATGGAGAAAATGGTTGTGACCTAAGAGAGTTGGGTTGTGCATGTGGCAATTAACAAACGTTAACAATAGGgtcctgatttgtttttaaatagaccTGAACTTGATCCATGATCCCAAAGTATCTAACTGCAGTACAGGGTAATAATAGCTTGTGCAAAACAATGTGGGTCTGCAGGAATAGAAATTCTACAATTGTACAGAGCAGACATGAGgatattgtactgtacattCATCAAAACTATGGAAACTAACAACCTTCATAAGCATGCATGTCACCTTTAAAGCTTCTACAAATGGGACAGTCTTACGGAGGTATATCATACAGAACCTGAAAGATGATTGTgccaggagagagggggaaaaaaaaaaaaaaaaagagagattgtGCAGACCCCAGTCTAATCTCTTATGATTCTAACTCCCCACTAAATTGTGCATTGTTAACTATTTAGATGAATTTATAGtaacaataaagacaaaacatatataagatcatcatcatcatcaaaaataataaaacaaaacacattaaccGGTCCAATGTGGACTTTAATGTTgaacacttcatttttttttttttttaaagtcattgCTTAGTGGTTTATATACACACTCTAAGCTACAACtctgtcacagacacacccgtGCACACAGACTCACAGGCACTTACAAGCACACAAGCccatgtctttccctgtgttGTCAGGACACAGCAGCTGTCTACAGCTGGGGGATGAAGCTCCTGAAGTAAGCTCTGCAGAGGAGACCCACAGAGAGCACTGTCAGCAAacaggacacagacacagaacacacagcacatgATAAGGAACACAGAACAATGAGCAGCAGTGATGAAAATATTACGAttagtacaaataaaatgaaaacttgaCCACCATATAGCagttttccattaaataaatgataaggAATTTATCTTCTCAGCAGCAGATCGCTGACACCCATGACATGAACGGCTCACTTCAAGGCATTCCTTATGTCTTAGTCATATTATCATATATCTATTATAAAGCAGTCATATGATATTAGTAAAAATAAGAGCTCTTTaatatactttgtttttaaatgctgtagaaaaatatagcattaattacatattttacagcctgcttcataacaattaaaacatgttataatCACTTATTTGATAAAATGAAGGTGATGCCCATAGATTGACCAATTTGTAATAAACTat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6785 lncRNA downstream 135573 32391883 ~ 32392110 (-) True G5539
TU6781 lncRNA downstream 138714 32387746 ~ 32388969 (-) True G5536
TU6772 lncRNA downstream 144000 32383409 ~ 32383683 (-) True G5528
TU6734 lncRNA downstream 258457 32268705 ~ 32269226 (-) True G5500
TU6727 lncRNA downstream 336141 32191320 ~ 32191542 (-) True G5494
TU6804 lncRNA upstream 15539 32545377 ~ 32547006 (-) True G5555
TU6820 lncRNA upstream 75050 32604888 ~ 32611344 (-) True G5570
TU6922 lncRNA upstream 574887 33104725 ~ 33105215 (-) True G5645
TU6983 lncRNA upstream 1036335 33566173 ~ 33567325 (-) False AMCG00004102
TU7015 lncRNA upstream 1096471 33626309 ~ 33627507 (-) True G5721
AMCG00004076 mRNA downstream 164557 32349953 ~ 32363126 (-) True AMCG00004076
AMCG00004077 mRNA downstream 193902 32331326 ~ 32333781 (-) True AMCG00004077
AMCG00004073 mRNA downstream 959668 31558683 ~ 31568015 (-) True AMCG00004073
AMCG00004074 mRNA downstream 988276 31537908 ~ 31539407 (-) True AMCG00004074
AMCG00004072 mRNA downstream 1207089 31319595 ~ 31320594 (-) True AMCG00004072
AMCG00004091 mRNA upstream 83258 32613096 ~ 32650701 (-) True AMCG00004091
AMCG00004090 mRNA upstream 133826 32663664 ~ 32671871 (-) True AMCG00004090
AMCG00004094 mRNA upstream 433202 32963040 ~ 32974811 (-) True AMCG00004094
AMCG00004095 mRNA upstream 452625 32982463 ~ 32985504 (-) True AMCG00004095
AMCG00004096 mRNA upstream 484690 33014528 ~ 33022148 (-) True AMCG00004096
TU6786 other downstream 101120 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 217773 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 5658105 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 6626071 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 8231907 24263907 ~ 24295776 (-) False AMCG00003909
TU6815 other upstream 63789 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 1602260 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 2362063 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 2431122 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 2824783 35354621 ~ 35414446 (-) False AMCG00004143

Expression Profile