RNA id: TU6820


Basic Information

Item Value
RNA id TU6820
length 6171
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G5570
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32604888 ~ 32611344 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttagtttgtttatttgttatgtttttgtttgtatgattttttCCCACATTTTTAGTATTACTGTGTCCATTTTGTCAGTGTTTGCCCACACAAGAGCTCTCTCCATGGCCTGTCAGACATTGGACTCTTGTTTGCACTGTAAGTATCCATCATAAATCTGCTATGTCTCACTTGCACCTGGTGGATTTACCCCTGTTCATCACAGCATCGCTGATAATTTTTTTCATGCCACTTAAAGACtggatttttaaaaagtatgccAACACAAAACACCTCTAACTGTCTGTCTACATGAAAAAACTCACAATCGAGCCCTTTCAGACTCAAGAggagtttggttttattttcatttttctgccACTGCAGATTTGGGAAGAAAGACACTATCACAAAAAGCACACCAAGaagaaagcaaattaaagaAACCAAGAGAATAGGGAGAATATTAAATAGTATTACCTGTGAGCACCTTGTAAACACAGCTGTGTGAAACTATGGCAGCCCGTGTCTCCTCACTCACCCTCTGCCCGCCAGGCAATTCAAGGGACTATCAAGGACGAGATGCGGCAGCCCTCTTattaattagttttcttttaatattttaaggttattactatttttttgttttgtttaaatcataCTTGCTTAACCTGGACAAAGGTTGCTTGAACATTGGTGATCGCCTGGTTTTGGAGTTGCTCTGGATTAGCAGGGGAGTGACGGAGTGTGTGAGGGACAGTCAGAGGGCTCAGTGAGCGGCACATTTCCCAAGATGCTGTGCGTTGTCTGGGCCACTGCAGGACAATGTGTGACAGTCTGTTCTGCCTTAAAAGCAGACTCTTATTTGGGACTAAAGACTGCAGAGGATAATGagcattcagaaaaacaaaaaaaacaaaaaacaatgacaactacccaacaaaataaaacgaGAACCAATCTGGGATGAAACACAAGAGGAAGAGCATTGCACGCAAAAAGAGTTCAACTTCAGAGGATTCAAGCCATGCCGAAGAAGCCGGGAATGATACAAGTCTGGTGACGCAGTCTACATAGCGGATTTAAACAGATATAATGAAGGCTCATCTTATTCCATCATCAGCATGTTGTGTgtaccatttttcttttcttttttttaaaaagctgttacagtaactaaacaaaaacagaattatttCAGTGCTCCTGGATGAGGGGGATTTCAACTAGTCTTAACCTTGGGAATGGAATGCCCTCTTGCTTCTGGATTTTTCTCTCATTCTTGTCAAAAAATGATGGTGTGAATTGAGCAGTCATAATTGTGCAGCTTGTTTTTCTAACTAGCTGGTGAGCTTCCAATAAAAATCATCTCCCAGACACACAAATTCTCACACAATGCCCTTGTGTCGTACTCTGTACAATTCCCACAACCGAGGGGGAAAAATCTCTCCAATGCTGCCATGGGACACTCATGATTAACAGATTGAAGACTGACATTTGCCTGGGAGGTGAATTCATTGAGAACGTTCACTTctgttgtgtaaaataaacaataatgtaatagtCTGTCATCAAGGACTGTGGCTGAAGGGTCAGAGGTCAATTCTGGGCTTTAGTGAAATATTAAGTATAAAAATGTGATCATGACTAAATAATGTGATTGTTCTTCACTAAAATGGTTCAGAGAGCACAGCACTGGTCAGCCAGCAGTCTGCATGATGAGCTTTTACAAGGAGACTGAAAACAGACACACTTTCGTGGTAATCCTCATGTAGGAATCAGACTCCTGTTACAGTGTAAGATTCCTTTCACGCTGGGTCATGTGATTGCAAGTTCGCCGGCCTTTAGCTCTGAGAGATTAACCCTAGATTCACTTGCTCCTCATGAAATCTAAGTTAATCACTCAATGGAGAACGGAGCACATTTCTAAAGCCCAGCATTGGTCACAGAGTTTGAAGCTGACCATGACCTTCCATAATCAAAATGGCACTACGAGCTTGCCTCTGTGTTAAACACAGACGTGAGTTCAGATGGGGGTGAACTCTTGCTTGGCTCTGATGTGGAAAGGGATGCTTTGAATGCAGGGAGCTGTTCAGGGATGTACCTCTCGTATCTTATGTTTTGTACTGTGGTGAATTATACCATTGCTATTGGAAAAGTGGTAGAATCTCAGATTGACAGCTAAATTAGCAGCCTTAGTACTGTGCTCATAGCGTGGCATCAGAAAGCTCCAGAAACAAGTATTAACTGGTTCCCAATGACTTTACTAGACAGAGGGGACATGTAAACAGTGTGTGATCACTTTATACTAGAGATAAAGTTTTGTTTGAAACCCATGCCCTTGGCAGAACTTCCAAACAGTGCAGGCCCTTAAATTTACTGATCCCTATCCAgtccttttttatattttttattatgattattagaaCAGCACAATCTGCAAGAACATATTCACTCACTCAAGTCATTCTTCAATGGTACATTTGCACATGTTTTTATAACCAGTAGGGAAATGTCTAAACActatgaagagaaaataaattatataataaataataaacatacaaaaatgacGGGCTTCCACTGTGGTTGCAACTGAACCGGGTAACTGTGCCACTGGGCTCTCTGTTCCCCCTTTTGTAAATATACCACCTCGGATCACACACTCGGGCCTTCCTTCTCACATGAAGCACCTGCATGTGTTGTCTGGGCTTATCCATCGTCAGAACGGCCACATGCAGGCACTTGGTGAACTGGTCCATTTCTCTAATAAGCTATTACCACTGCTTGCATCTACTGTAAATGAGAAGAGCTGCGGATTTTAGAGTCTCCCCTATGGCAGCATTTTCACAGACATATTTTGAGACATAATGAAAGCTTTCCACCCCATAACCCGTCATTGTATCCCTGGGACACAAACCAAAAACCTGAATTGATTCATTACAGTCATGTTGAGTCGGGCCCAGTGTTTTTTGTCATGGTGATATGGCAATAGCCACTTTTTCAGTATTATTAAAGCACTTAGATGACACCTGCAGTATGGTCTAATAGGGCACCAGGAGAGAGATTCTCTGAGACCAGGACACTTGTGTCAGTGAATTTTCAAACCTCTCGCAGCCCCTTGACTCTCAGTGGGCACTGCGATGCAATGGCACGTTTCTTTACATGGTACTGGGCAACACTTTAAGAACAGAGACGGACATCATGGGGAATTTCATGTTCAAAAGCAAGTGGAGAGCACTTCACTGTGAAGGGCTTGGCAAGCTCTTCTTGACTAAAATCACATACTCACTACATAGATCTCAGTGTACTTTACTTTAACTTCTGCCATGTTCCAAAATAATGTAGAATTCAGCTTGAATTCACATGAAATGAAGACTGCTTTGATTTTGATTGTTGTACAAGGAGACCTTGCATATTTCTATTGACTGACCCATCGCATTTAAAGCTTTGCCCTGCGCTGCAGCTCTGCAAACATCTCTGCCCGTTCtgtgaacacactgcagctgcaCCTGCAAAACCTGAGCACACACTCCGGGGCTCTTTTTTGTCGGAGCAACAGAGATCCCCAGGGAAGACAGAGGGCTCCCAGCCTATCAAAGCCACACTGCACTTTATAAAGAGGAGCTCCTGTGCCTGGGAGCGCTCTCTACTCTGAGATCAGCTGTGCCTCCAGATAGCCGGGCCATACATGTGGCTGACCACCATCAGCTGTAGGGCTTCTACTGTGAACCGCGGAGGTGTTGCTCATTGAGCCAAGAGAATTGCTTTTGGTCAGGCATTGCTTTTGGCTGGAGCTCATGACACCAGACCACCTCTGTTCTCTGCCATTTCAGCATCCTAAGCAGTGCAGTACTCAGACACAAGGCTTGCCCGTGTGTTACGAAGCAGAATTCATTTGAAAGCTTCTAACCTGCTTCAGCCCTATGGTGCTGGTAACCTGGGCTGCCCTAAAGTGTACCGCCTGCTCCGCAGTGCACCTACAGCCTCACAGCTCTGTGGTAACCTGCCCTTCAACGTCAAGCGTAGCCCATCAGGTTGGCTTGGCTCAGCCATCCCCACTCAGTAAGAGAAGCCCAGACTGACACCTGAAGGGCTTAGGGGTAGCTCTGTCAGGTCACTGAGCTACACCACTACCAGACTTCTTCAGACACAGGCGcccggcacggcacggcacgcaACAATCTGCCAGTCCTGTGGGCTGCCATCAAAGCAACATCGCATCCGTTCCTCTGCACAGAGATGTATTCTAGGTCACAGCCTGGAAAAGATTTAAAAGGCCTTGTGGGTGGAATTAATGTGCATTCTGGAAGAATACAGGGGGTGTTTACATgaccctttttttttgttattatgagCGGTTGTACCTGGGGGCTTTTCATTATGTCAAGtaaattcagatttattatACTGCAATGAACATGAAGCATCAAGagaatttcattttattttatttcccccctttaACTGTCCCTCAAGTACTCTAGGTGGGTCGTATAACTGTAGATGGCACTGGAATagctggaggagagagaaaccACCCCAAGCATGGAGGGATTACTATCTTTAAGAGATATATAGTCTTGCACTTACCCTAACACGACTATGTTTTCCAAATGAAGCCTTTTCTGATTGTATGAAGCTAGGTAGAAATTACGCTAACTTTTTGGCAAGATTTTAAGCAATAATTTAAGTCCAAATTAAACCGTGAGATAGGATGAAATGGCCTGAAATGCAAGGGATCTTTTTAAAAGGTATTAGGGAATATGCATGTAAGCTAGAGGAGGTATGAAACATCTTGATTATTTGgacaatcaataaaaaacaaagacatacaaGAAACTCTTCTTTCATGGAAACTGCAGTAATAATGCAAAAATTTGATCGGCATAGTTTTTCCTCCCCTCTTGACATTAGCACATGGCCTGTTATCACCTGAAGTCAGTCAGCTACTAACAGTCAGTGATCTCCGAAAAAGGAGAATATAAAGTCTAAGGTTTAAAACACACctactattttttaaatactagtCTATTCAcagtgtattaattaattaactgaaccagttaaataatcaattaacaaCCTATAAGTATGTAAAGCAATTGATAAGCTTGTAAGAAAACCCAGCTTGGAAAATGTAGGTAGATACAGAGTTAGAGCTGGCAGTGACAAAGCCTTAAAACATTCAAGTCTTCATTTGGTCTGTTCTTTCACAAAGCTAGATGTGTAGAATGAGTCGCTGGGTTTATATGAAGCAATAATTGGCTGTGTTTATGCTATTTCGATtgtgaaagaaatacattattgcaACTTGTATAATCAAGAAAGTGCAGTGTATGTGATATATGGCATCCAGTCTGGTCCACAACATGCCCAGCTGTGGAGGTATGGCTGGTACAGGACGTAGTTTCATGACTCCATTGAGAGCCCACTTGTCTGAGTTTTACAAGAAAGCTTAACACTGAATTCTGCTACTTTAATAGTTTACAACATAACAaactcttttaaaaaaacaaggctaTTATCCCTTGTTTTAATGTCTACTCTATTTCACACTCTTGTCATACATTGTAGTGTACAGAGGTCATCTGAATGCGAAATTCATTTGAGCTACCAGCCAATTTCAGTGACAGGTACGTCTGAGTGCTTGTAATATTTTGTGTGACCACAAGGGGGAACGcaatacaacaacaaccacTATTGTTTCTCTGTGGCTCTGAAGTAATTGCAATGGGAACAATCTATAAAGGCCATATTtgatgtatatacatattaagaAAAGTTGCACCCCTTTAAAACTGGCTGTATACGTTGAAGGAGTCAGTGCTGGTAagggttatttttttaaaacaaactcttATGAAAGTTGTACAGTTGTTGAACGTTTTGTACACCATTCTAGTTAAggagataataaataaaaaagttaagGAATGTCCAATTAACCTGTAAATTGTACCTCTATTTATTTGCCTTATTTAGTTtgctatattttttatgtatacacGGCATTATgctaaaaaaatgttatatatatatgaaaagtataaatatatatataaataattataaactgTTGTCTGTATTTGTTGGTCAGTTTCAAAAGTATTAGAATGAGCTGTTCAGAATCCTCTTGTTTTGCTCgcctggttttattttgtagggttacgataaaataaaatttgtcCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6804 lncRNA downstream 57882 32545377 ~ 32547006 (-) True G5555
TU6801 lncRNA downstream 75050 32527683 ~ 32529838 (-) True G5552
TU6785 lncRNA downstream 212778 32391883 ~ 32392110 (-) True G5539
TU6781 lncRNA downstream 215919 32387746 ~ 32388969 (-) True G5536
TU6772 lncRNA downstream 221205 32383409 ~ 32383683 (-) True G5528
TU6922 lncRNA upstream 493381 33104725 ~ 33105215 (-) True G5645
TU6983 lncRNA upstream 954829 33566173 ~ 33567325 (-) False AMCG00004102
TU7015 lncRNA upstream 1014965 33626309 ~ 33627507 (-) True G5721
TU7105 lncRNA upstream 1264097 33875441 ~ 33918321 (-) True AMCG00004116
TU7119 lncRNA upstream 1404093 34015437 ~ 34019511 (-) False AMCG00004120
AMCG00004076 mRNA downstream 241762 32349953 ~ 32363126 (-) True AMCG00004076
AMCG00004077 mRNA downstream 271107 32331326 ~ 32333781 (-) True AMCG00004077
AMCG00004073 mRNA downstream 1036873 31558683 ~ 31568015 (-) True AMCG00004073
AMCG00004074 mRNA downstream 1065481 31537908 ~ 31539407 (-) True AMCG00004074
AMCG00004072 mRNA downstream 1284294 31319595 ~ 31320594 (-) True AMCG00004072
AMCG00004091 mRNA upstream 1752 32613096 ~ 32650701 (-) True AMCG00004091
AMCG00004090 mRNA upstream 52320 32663664 ~ 32671871 (-) True AMCG00004090
AMCG00004094 mRNA upstream 351696 32963040 ~ 32974811 (-) True AMCG00004094
AMCG00004095 mRNA upstream 371119 32982463 ~ 32985504 (-) True AMCG00004095
AMCG00004096 mRNA upstream 403184 33014528 ~ 33022148 (-) True AMCG00004096
TU6815 other downstream 8481 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 178325 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 294978 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 5735310 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 6703276 25897934 ~ 25901612 (-) True G4521
TU7138 other upstream 1520754 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 2280557 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 2349616 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 2743277 35354621 ~ 35414446 (-) False AMCG00004143
TU7893 other upstream 4756641 37367985 ~ 37368822 (-) True G6441

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU279870 True 4332 lncRNA 0.40 1 NC_053131.1 28867900 ~ 28872231 (+)