RNA id: TU6919


Basic Information

Item Value
RNA id TU6919
length 456
RNA type TUCP
GC content 0.35
exon number 3
gene id G5642
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33130120 ~ 33131186 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGCATAAATGGGTCATCCGAGTCTCTATTCTGGGCTGCAGTCTCAgttctctcttcctccttctccacACTGGCCTGGAAGTTGGTCTCCAGACTGAAGAGAGACTCATGCTCCCGATCTGTGAACTCTTCCCAAGTCTCTATTTTGTCACCATCTTTCTCTTCACCCTCTTCTATCCCATGATCCTTCTCCAAATCCTGCTGCTTCTGCCGTGGCTGCTCTTCTGCTTCCGGGTGAcctccttcttcctcttcctcactcCCAGAGTCACTTTTTCCTCcttcttcGTCATCCTCAgtctctccttcttctgcttcttcaaTCTCACCCTcactctcctcttcctcttcctcactctcctccacctcctggGCAGCTGTACTCAATGTTGACAGGAGTTTCTGGTAGGCGGACTCCTGCTCTGGCTCACTCTGTACATCACTATCCACATCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6819 lncRNA upstream 518069 32611833 ~ 32612051 (+) True G5569
TU6774 lncRNA upstream 727737 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 742585 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 746441 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 780017 32348390 ~ 32350103 (+) True G5522
TU6947 lncRNA downstream 307142 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 341850 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 343656 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 434987 33566173 ~ 33567479 (+) True G5688
TU6999 lncRNA downstream 466706 33597892 ~ 33600011 (+) True G5707
AMCG00004092 mRNA upstream 183204 32937405 ~ 32946916 (+) True AMCG00004092
AMCG00004093 mRNA upstream 229450 32876810 ~ 32900670 (+) True AMCG00004093
AMCG00004088 mRNA upstream 285470 32838964 ~ 32844650 (+) True AMCG00004088
AMCG00004089 mRNA upstream 293439 32814743 ~ 32836681 (+) True AMCG00004089
AMCG00004087 mRNA upstream 355308 32728660 ~ 32774812 (+) True AMCG00004087
AMCG00004099 mRNA downstream 1169 33132355 ~ 33135491 (+) True AMCG00004099
AMCG00004101 mRNA downstream 6450 33137636 ~ 33142538 (+) True AMCG00004101
AMCG00004100 mRNA downstream 109846 33241032 ~ 33247564 (+) True AMCG00004100
AMCG00004108 mRNA downstream 304564 33435750 ~ 33452672 (+) True AMCG00004108
AMCG00004109 mRNA downstream 429838 33561024 ~ 33565863 (+) True AMCG00004109
TU6554 other upstream 2235293 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2858596 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 5026909 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 5062334 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 7334329 25794052 ~ 25795791 (+) False AMCG00003930
TU7209 other downstream 1721677 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 2621347 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3141006 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3642815 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 3730361 36861547 ~ 36891746 (+) True G6328

Expression Profile