RNA id: TU6922


Basic Information

Item Value
RNA id TU6922
length 491
lncRNA type intronic
GC content 0.40
exon number 1
gene id G5645
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33104725 ~ 33105215 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAATTGCATGTTGTTTACTATTTTCCATAACTGGCAtctacatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaaggaaggtgatttaagcaattttgagcgtggcatggttgttggtgccaggtgggccggtctgagtatttcacaatctgctcagttactgggattttcatgcacaaccatttctagggtttacaaagaatggtgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcgAGCTGATAGAAGAGAAAccttgactgaaataaccactcgttacaaccgaggtatgcagcaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6820 lncRNA downstream 493381 32604888 ~ 32611344 (-) True G5570
TU6804 lncRNA downstream 557719 32545377 ~ 32547006 (-) True G5555
TU6801 lncRNA downstream 574887 32527683 ~ 32529838 (-) True G5552
TU6785 lncRNA downstream 712615 32391883 ~ 32392110 (-) True G5539
TU6781 lncRNA downstream 715756 32387746 ~ 32388969 (-) True G5536
TU6983 lncRNA upstream 460958 33566173 ~ 33567325 (-) False AMCG00004102
TU7015 lncRNA upstream 521094 33626309 ~ 33627507 (-) True G5721
TU7105 lncRNA upstream 770226 33875441 ~ 33918321 (-) True AMCG00004116
TU7119 lncRNA upstream 910222 34015437 ~ 34019511 (-) False AMCG00004120
TU7145 lncRNA upstream 1187054 34292269 ~ 34292496 (-) True G5805
AMCG00004096 mRNA downstream 82577 33014528 ~ 33022148 (-) True AMCG00004096
AMCG00004095 mRNA downstream 119221 32982463 ~ 32985504 (-) True AMCG00004095
AMCG00004094 mRNA downstream 129914 32963040 ~ 32974811 (-) True AMCG00004094
AMCG00004090 mRNA downstream 432854 32663664 ~ 32671871 (-) True AMCG00004090
AMCG00004091 mRNA downstream 454024 32613096 ~ 32650701 (-) True AMCG00004091
AMCG00004097 mRNA upstream 17377 33122592 ~ 33132313 (-) True AMCG00004097
AMCG00004103 mRNA upstream 449195 33554410 ~ 33556854 (-) True AMCG00004103
AMCG00004102 mRNA upstream 460871 33566086 ~ 33567299 (-) True AMCG00004102
AMCG00004105 mRNA upstream 464095 33569310 ~ 33597389 (-) True AMCG00004105
AMCG00004106 mRNA upstream 494678 33599893 ~ 33607026 (-) True AMCG00004106
TU6815 other downstream 508318 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 678162 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 794815 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 6235147 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 7203113 25897934 ~ 25901612 (-) True G4521
TU7138 other upstream 1026883 34132098 ~ 34135600 (-) True G5801
TU7224 other upstream 1786686 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 1855745 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 2249406 35354621 ~ 35414446 (-) False AMCG00004143
TU7893 other upstream 4262770 37367985 ~ 37368822 (-) True G6441

Expression Profile