RNA id: TU7032


Basic Information

Item Value
RNA id TU7032
length 2036
lncRNA type read_through
GC content 0.52
exon number 2
gene id G5731
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33685727 ~ 33768814 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTGTGATCATGTGGAGCTTTATTGCATGTGGACCAAGACACACACAGGTAATAAATAGAAACCTTTACACAATTCCAAGGCTAGGTCAAATATAAAAGACAATTATCAATTTTTGCCAAAGTGATTATGCATTgcacaacagaaaaatatagtCCAGGAACATTACTCTTCAGCATAGTGAAATCTGAAATGACTTCAGTGCGGAGTAATGAGTTATCCATCTCCAACCAAACCATTCAATTCAATATGCAGCAATCTAAAAGTTTAAACTTAAGGCATATGTCACAGTTCACCATTATTTTCTTGCATAGGTAAACCTTTTTTAATGGAGAAACTAAAAAGCAGGAGGATAAAAGTGGgttccttaatttattttacatggatTCATTTTACCCTCTCAAGATTGGCAgtgaatataaaaaagtattttgcacgagaagacaaaaacaaaaaaattgtccacaataaaaagaaaaatataatacacattaaaacataaaaccaaaatgCTTGTTAACCCACTGTACTACACAGCAGCAGTAGATTTTGGGGTAGCTAATGTTGGCATTTCAACTGTTGTACAACTATTTACAcccttaattacattttacattcctGTGTTACAACAACTATACTCCACATCTGAAACATCTTTGCGTGTACAAGACAGAAAATATCCAAGCCCGCCAAGGACTGTTCCCAGCCATTGTATCATTTCACATCAGAGGTTTAGTTTAGCACATCTAAAAAGGTTTTGAAAAAGTTTGTAAATTGTCAAGTTAAGAGCTTCATCATTGGATTATCAAagacttcaattaaaaaaccttttgttttaaagttatttttactATTTGTACACTGTGAGGTACAAGAGCAAGTTAAACCTTTCCCAAAATTCAGAGCAGTAATGAGTCAAACCAAATCCCTTCTATATTAACACAGGAAACTGGTTTGGCTTGAACTTGCAGGCAGCCTCTCCAAACTGTTCGTTTTCGCTCAGACCTTTCGCAAGACTGTCAGCAGCCCAAAGTAGAACGCCTCAAAACAACATACATTCAATTTTGTTTGTCAAAGGCAGTAATCtacatttagtttgattttgGCAGGAGAGAATGTGCTTTATGGCTCTTAATATACAGTACCTAACCACAAAATAACTGCAGCCAAGCACTGCTTATGTTTaaagaaattcaaataaaaacttaGTTATTCAGATACAAAAGTGCACAGGTAAGTCAATCAGCTTGAACATAACATGTATGGAAACTATAGTCGGTTTCTAACATTAGTAATTTGTAGGTAGGTAacaataccttttttttttttttttttttttttttcctttgaaacCAAAAGGGTGGGACtagatgttttctttctctcttctgaGGGGATTGGCATTGTAAAGTAAGCCGGGAGGGGGTGTGTGATGGGGGGGGGCTCTGGCACGGTGGACCTGCGGGGTTTGTGCTGCAGACTCCTGATGTACAAACCATCCATCAAAAACAAGGTGCCTGCTTTGTTCCAGTCCTGATGCATTGACTGCTGTTACTGACATTTTATACAGGtggggtggggaaaaaaaaaaaaaaaagtttggtttTGCTAAATGAAAACCTCTctatccccctccccccctgctATTGCACAGTAAGGTTTTGATGGCACACGGAGGCACTTGTTCTCTGAACTTTTCCACGGGTGGACCTCCGTGTGTCCTGCGTCATTGTTGCTCGACTGGGATGAAGTGTATTGATGCACTGTGGCCAATTTGTAAGGGATTTGTGCCTCCGAGAGAAAGACCCCAAATCAAACTCGGTGGCCGCACTGGTCTTTGTGTATAAtactgtctttctttctctgttatAGAGGAGGTTAAAAGgtctgttttattgtaatatcatatttttatacGTCTTGAAACACGTGGTACAAAGGATGTTTGTCtttgttaaaacataatttaaaaaaaaatgacaatgaagTGATAAGACGTATGAAAGGTTTACATGAACCCATAAGTATCTAAGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7014 lncRNA upstream 58220 33626367 ~ 33627507 (+) True G5720
TU6999 lncRNA upstream 85716 33597892 ~ 33600011 (+) True G5707
TU6976 lncRNA upstream 118248 33566173 ~ 33567479 (+) True G5688
TU6969 lncRNA upstream 210680 33474842 ~ 33475047 (+) True G5681
TU6968 lncRNA upstream 212397 33473036 ~ 33473330 (+) True G5680
TU7059 lncRNA downstream 775 33769589 ~ 33771848 (+) True G5750
TU7098 lncRNA downstream 123660 33892474 ~ 33893143 (+) True G5768
TU7121 lncRNA downstream 309537 34078351 ~ 34080785 (+) True G5787
TU7123 lncRNA downstream 313012 34081826 ~ 34090122 (+) True G5788
TU7144 lncRNA downstream 523457 34292271 ~ 34292501 (+) True G5804
AMCG00004109 mRNA upstream 119864 33561024 ~ 33565863 (+) True AMCG00004109
AMCG00004108 mRNA upstream 233055 33435750 ~ 33452672 (+) True AMCG00004108
AMCG00004100 mRNA upstream 438163 33241032 ~ 33247564 (+) True AMCG00004100
AMCG00004101 mRNA upstream 543189 33137636 ~ 33142538 (+) True AMCG00004101
AMCG00004099 mRNA upstream 550236 33132355 ~ 33135491 (+) True AMCG00004099
AMCG00004115 mRNA downstream 136477 33905291 ~ 33912885 (+) True AMCG00004115
AMCG00004121 mRNA downstream 350757 34119571 ~ 34130023 (+) True AMCG00004121
AMCG00004122 mRNA downstream 362312 34131126 ~ 34133612 (+) True AMCG00004122
AMCG00004125 mRNA downstream 862407 34631221 ~ 34638669 (+) True AMCG00004125
AMCG00004124 mRNA downstream 897578 34666392 ~ 34685790 (+) True AMCG00004124
TU6919 other upstream 554541 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 2790900 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 3414203 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 5582516 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 1084049 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 1983719 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 2503378 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3005187 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 3092733 36861547 ~ 36891746 (+) True G6328

Expression Profile