RNA id: TU7059


Basic Information

Item Value
RNA id TU7059
length 2260
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G5750
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33769589 ~ 33771848 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaatagaGAGTGGTTTCTGATAATAAATTTAAGCATAAttgaaacaaatgttatttgtgATTGGTGGGTAGGTCTGTGCCTCACTGTTTTTAACACTAGCTTTGGCTTATAATGTATATGCTGTTCAGTCTAATCTTATAACATTATTCACCATTTGCATTGCTTTACTGAGGTTTTTGGTCTTGTATTTATCTGGTCCTTATGTATATCAATACAGGACAAGAAATTACAACATTACAAACTGCCCATGTCAAAGCAGTAAATCTAATCATGTGTAATTCTGAAATAGACTGAgttaatctatatatatataaagaagttAGAGTAACCAGTGAGAAAGTGGAATACAAAAGCAACCGCAGTAAACAATAATTTAAGACTATAACCTGTTATATCAGGTaaagaatggaaaaatacattaaaatcaatacaggATAGCTTGTAGAAATGCACAGTTTACTGCAGCTGTAGTGGTGTGTGAAAATCTCGGGTTGTATTCACTCAGAAAATGTGTTTCGTTAAGAAAAAGGAATGGGAATGAGTCCAGTATGAGTGGGCTAAGAGAGAGTTTCAAATAAAGCCTTTCCCATGAACTTCCCTGGAAATAATGCTGCAGTGGGGAAATGCATTTGCAAGCCAGCAGGACAGACCAttgctcttttatttctttacagcTGGTAACTCGATACCAGTGTGTTAATCTGCATATTTGGTTTAAAGATTGTATTAGGCAGCATTTTTTGAATTGCTCTTCCTGTGGGAACGAGGCACTTCAAATAAGATCATTTTGtgaaagcaatttatttatatttgaatccCGAGCAGCTCATGTTAATTAATCCTGCTAACTTTCTGCGGGTTTAGCCGGCCCCTATTAGGACTTATTTTTGAAAGCCCTTAGCATACATACTTTGGCATTAGGAAGTCCACAGAGTCCTAAGTAAAGTACAAGAAATTACTtggtaatatatattatgtactaagtgtaatatatgtgtgtgtgtatatattttatgtattaattcctTATATATTGTTAGGTTGTGGGGAATACTGTAGGGCAGTCATGATATAGCAGTTTGTTATAGATATTTCATTAGTCAATAGCTGAATAACtggaataaaattaaacattacaaagtaagcatgttattttctaaattaactaaCAGCTCAagtggaatgaaaaacagaagatcCTGCACCGTTCCAGGACCTGTGCTGGCCTCCTCTGCTTTAGGGTAACtatgagaagaaaataaatgaatggattttcataattacatttttaaatagttttttatattaacacagaaaatggaggcttaaattaaaaaacaaacaaaaaaaacatgcataatcAAACTAATTTACTCTTATCCCTTTGCTCTAGTGCTCTTCAAGCAGAATTAAGTGAAATTtgaatgcagttttatttgcattttgtatttaaaagtcTCCCAAAATAATTTGCTTCAAAGTCAGAGGCATGAAAACATGAGTTATTTCTAGCAAACAGATGTAATTAGATATAATATCATGGATTGTTACTATGAAAAGATGAAAGCATTAAAGTAATTGccttaaaaagataaaacaaataaatcctgATTCAGAGCACAAGAATACTGCCATCTTGTTCTtctaataaatgttatttatgttatatagGTCCTGAAAATCTACTGATTTCTGCTCACTTTCCATAAGAAGTGGTCCTGTTTGTCCTGGAATTATAGTGTGTGATTTTGCTCCTTTCATCTGCTTCACCATGAAAGTTCTGTTTAACCTTGGAGGAATCACAAATATGAAGTTGTGGAAAACGTTTGATGTGAATTTATTATGATTTCCCCTTGATAGCGCCTTAATGAGTTTGGAGAGTGTTCAAGCCTTTGTTCAGTGTCCTGGTTCTCAGGCTGTTAAATAAAAGGTATAAtgtgggaaaaaagaaaataacaaaaaggcaCAGCAGCTTTGGaaacaataattattgtatacTTAAGTAAATACTGCTTAGCTAAGATTTACAGTTATTCCATTCTCTTgctacattatattattttactgataGTGCCTGGATAATTCATACTAGTGGATTCTGTACCCTATAGGTGTGaatattaatgaatgtatttaaaccaCTGCAATAAAATTTGAATCTAATCttatctatctttttttttttttttactgtttttactATATGGTTTGGTGtaaatttcaatgtattaataattttctGGTTAAATAAAACCTAAC

Function

GO:

id name namespace
GO:0097367 carbohydrate derivative binding molecular_function
GO:0017076 purine nucleotide binding molecular_function
GO:0035639 purine ribonucleoside triphosphate binding molecular_function
GO:0032553 ribonucleotide binding molecular_function
GO:0032555 purine ribonucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7032 lncRNA upstream 775 33685727 ~ 33768814 (+) True G5731
TU7014 lncRNA upstream 142082 33626367 ~ 33627507 (+) True G5720
TU6999 lncRNA upstream 169578 33597892 ~ 33600011 (+) True G5707
TU6976 lncRNA upstream 202110 33566173 ~ 33567479 (+) True G5688
TU6969 lncRNA upstream 294542 33474842 ~ 33475047 (+) True G5681
TU7098 lncRNA downstream 120626 33892474 ~ 33893143 (+) True G5768
TU7121 lncRNA downstream 306503 34078351 ~ 34080785 (+) True G5787
TU7123 lncRNA downstream 309978 34081826 ~ 34090122 (+) True G5788
TU7144 lncRNA downstream 520423 34292271 ~ 34292501 (+) True G5804
TU7148 lncRNA downstream 610020 34381868 ~ 34382099 (+) True G5808
AMCG00004113 mRNA upstream 1953 33767046 ~ 33767636 (+) True AMCG00004113
AMCG00004110 mRNA upstream 8132 33747909 ~ 33761457 (+) True AMCG00004110
AMCG00004109 mRNA upstream 203726 33561024 ~ 33565863 (+) True AMCG00004109
AMCG00004108 mRNA upstream 316917 33435750 ~ 33452672 (+) True AMCG00004108
AMCG00004100 mRNA upstream 522025 33241032 ~ 33247564 (+) True AMCG00004100
AMCG00004115 mRNA downstream 133443 33905291 ~ 33912885 (+) True AMCG00004115
AMCG00004121 mRNA downstream 347723 34119571 ~ 34130023 (+) True AMCG00004121
AMCG00004122 mRNA downstream 359278 34131126 ~ 34133612 (+) True AMCG00004122
AMCG00004125 mRNA downstream 859373 34631221 ~ 34638669 (+) True AMCG00004125
AMCG00004124 mRNA downstream 894544 34666392 ~ 34685790 (+) True AMCG00004124
TU6919 other upstream 638403 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 2874762 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 3498065 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 5666378 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 1081015 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 1980685 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 2500344 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3002153 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 3089699 36861547 ~ 36891746 (+) True G6328

Expression Profile