RNA id: TU706



Basic Information


Item Value
RNA id TU706
length 359
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G586
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 3596921 ~ 3599589 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGGCACGCTGTGGTGAGGATCTCTTTGACATGAGTCAGCCAGTTGGACGCCTCCAGCTTGCTCAGCCAGCGGTCCATGTTGTGAGACTGGTCGTTGCAGGCTTCCACCAGCTTGATCAGGCTCTCCTGGAGGATACCAACCTCTCGATGGCCTTGTGGATCCTCCTCCACTGGGGGTAGTGGGCCTCCTGCTCAAACCCGCCGCCCCTGGCCTTGGCCTGCTGTGCCACATTGATGGTCCGGGTGTCGATGATGTAGCCGCGCTTGCCTGCCCGCAGCGTAGCGTTGATCAGCTTCTCATCCTCCTTGCAGCGCCGCCCGTTGGTGCCAGTCAGGGGCTGTCCGGCACGCATCATCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU698 lncRNA downstream 59034 3536769 ~ 3537887 (-) False AMCG00003444
TU697 lncRNA downstream 71826 3524024 ~ 3525095 (-) True G578
TU653 lncRNA downstream 168630 3424088 ~ 3428291 (-) True G541
TU609 lncRNA downstream 385044 3195905 ~ 3211877 (-) True G500
TU568 lncRNA downstream 485870 3086465 ~ 3111051 (-) True G464
TU746 lncRNA upstream 263408 3862997 ~ 3865429 (-) True G624
TU764 lncRNA upstream 294335 3893924 ~ 3895512 (-) False AMCG00003459
TU799 lncRNA upstream 321407 3920996 ~ 3974710 (-) True G664
TU804 lncRNA upstream 376168 3975757 ~ 3975989 (-) True G667
TU850 lncRNA upstream 682236 4281825 ~ 4316284 (-) True G707
AMCG00003444 mRNA downstream 57954 3536172 ~ 3538967 (-) True AMCG00003444
AMCG00003443 mRNA downstream 60906 3466802 ~ 3536015 (-) True AMCG00003443
AMCG00003439 mRNA downstream 181636 3404970 ~ 3415285 (-) True AMCG00003439
AMCG00003440 mRNA downstream 196237 3398726 ~ 3400684 (-) True AMCG00003440
AMCG00003436 mRNA downstream 305694 3290037 ~ 3291227 (-) True AMCG00003436
AMCG00003449 mRNA upstream 109524 3709113 ~ 3714240 (-) True AMCG00003449
AMCG00003451 mRNA upstream 253558 3853147 ~ 3855295 (-) True AMCG00003451
AMCG00003459 mRNA upstream 276643 3876232 ~ 3895524 (-) True AMCG00003459
AMCG00003461 mRNA upstream 492503 4092092 ~ 4120379 (-) True AMCG00003461
AMCG00003464 mRNA upstream 610158 4209747 ~ 4211902 (-) True AMCG00003464
TU643 other downstream 166649 3394657 ~ 3430272 (-) True G531
TU462 other downstream 1158100 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 1195026 2397642 ~ 2401895 (-) False AMCG00003423
TU920 other upstream 1051182 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 1746250 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 7351587 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 7503737 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 8324219 11923808 ~ 11939783 (-) True AMCG00003623

Expression Profile