RNA id: TU7138


Basic Information

Item Value
RNA id TU7138
length 2604
RNA type TUCP
GC content 0.41
exon number 2
gene id G5801
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34132098 ~ 34135600 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agggaaagatgaatgcagcaatgtacagagacatccttgatgaaaaccttcgccccagtcggaggtccagagcgctctggagcaggttcatcttccaacaggacaatgaccctaagcacccagccaagataacaaaggagtggctacaggacaactctgtgaatgtccttgagtggcccagccagagtccagacttgaacccgattgaacatctctggagagatctgaaaatggctgtgcaccgatgctccccatccaacctgatggagcttgaggtcctgcaaagaagaatgggagaaactgcccaacgataggtgtgccaagcttgtagcatcatactcaaaaagacttgaggctgtaattggtgccaaaggtgcttcaacaaagtattgagcaaaggctgtgaatacttatgtgcatgtgcttttttttttttttttattaatacattttgcacagaTTTCAAGCAAACTTCcctcacgttgtcattatggggtattgtttgtagaattttgaggaaaataatgaatttaatccattttggaataaggctgtaacataacaacaaaatgtggaaaaagtgaagcgctgtgaatactttctggatgcaccgtgtgtgtgtgcgtgtactaAAGTTATAAAAGTATTACTTAATATAGGTATGGgttcatgttttatattcacTATGTATGGACATCATGAAGGCCATCAATCACTCTTATTTGAGAACCTATCGTATTCTGGTCTGTGAATTAAACTGACATAGAGGAATTATCTTCACCTTTCAAAAAGAAATATTCTCTTGAAgtcaaaattaacatttttgcgACTAATGCGTCTTTAACTATTGTGTTATCCATCAGGCTATTGAAGGAACTATAGCTTAAGTATGAAGCATTTATAATGTTTCATGTGTAAGAATGCTGCTGATGCATAAATATAATCCCTCATGCACTGGAGAAAAGAATCTGGTTGTTTCAAAGCACTACCTGCGTCAGCCTGCAGGCTCCTTTGAATGAACTCACTGACTAAGGTGGAACTGTATTATCTATACAGTTACTATATATGTAACTATATGCCAATTTTGATGTTCAAAACAATGTAGATCATAAACTGCAATCATACATACCACAGACATTCCAATCTTTTTTTCCTGACTACATTTCAGCAGAGAACAATACAAGACtctaatacaaaatatttagtgTGCTGTGTATTAGGAGATTTTTTTCAAAGCTGATATTAGCAAGCTCCACTACAGAACAAACTGAATATCCTACAACAGCACACTTTAAACAAACCCATTTGGTTTTAAAGGAAATGATGCTCATGCAAATGCTGCCATCTTTTGCTTTTGTCATTctactttttttattcttccacCACAGTCTGAAGATAAAAGCCTGGCCTACAGAAGAGTACTCCCACTGGATAGGATACATTGAAAAGTATTGGCTAGCATTCCATTTCCACACAATTCTCCTTGGTGACACACTTAAAGCCTAGAAACCTCGCTGATTACAGCTCCAGTTATCAAGATGGATGTTCTGCCCACAGTGCCTTAAGTGATTTGAATACACAATATGCCTTGATCCTCCATATCAAGAACTAGACACCAGGAAAGCAGGGTTTACAATCTGTCAATCTGCTTTCATCTGCTTTAGGTTTGTCCTTATTACCCGTGCATATTGCCagctaaattaattcaaatgcacatattttaaagtgatcgaaaagtacagagaaacacaaaattgaTCTCTAAcaactaaatattaaatgtattaacaccGAGTATTATTCAGTTctgaatttaaacttttttttgacTGTACACATACTTTTTTAGTCCTGTATGCTTTAAAATGAGTTTATATAGTTAGGTCTCCCTTGTGATTCCTGTCACAATATTTGtcggagtgtgtgtgtgcatgatttaaacaaattagtgtctctctctctcaaacaatACACCTTAGGCACAGTAATGCcacaacatatacaaatatttattcttcAGATGACCTGTTATAGAAAAATCTGTGTATTCTCCATtacatgcaaaaatatatttttcatcactTTCAGATctataaacattatttatatctataagtaacctgaaattatttaatatggtGATGAAACTGAACAACTGCTTTCTCTTGCTCGTGTGTTTCTATGGAGCCCCTTCGAAGTCTTCGTATCTCATTGATTGCATCAACGCCCATGATTTTCTTCTCCTTCACCAGGTAGCAGGCGAGCATGGTCCCTGTCCTTCCATGCCCATGAAAGCAGTGCACAGCAACTCCCTAAAATTCCCCCTTGGAGTTGGCCGCTTCGACAATGGAGAGGAACCGGTTGATCTGATCCAAGGTGGGTGGACAGAAGTCGTCTATTTTTATGTGATGCAGTGTCAGTCCGGGACATGTATCATGATAAGGAGGCTTTCTTTCACAGAGGGTCACCAGGTGCCGTATGCCATTGTCCAGCAAGAACTGATAGTGCGCAGGCATCCGGGGCATGGCCATACCAGCCAGCTTTTTTGGTTCCACCCAGGAGAAGTTAGATGGGCATGCAGAAGCCATTACTGCAGTACAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7119 lncRNA downstream 112587 34015437 ~ 34019511 (-) False AMCG00004120
TU7105 lncRNA downstream 213777 33875441 ~ 33918321 (-) True AMCG00004116
TU7015 lncRNA downstream 504591 33626309 ~ 33627507 (-) True G5721
TU6983 lncRNA downstream 564773 33566173 ~ 33567325 (-) False AMCG00004102
TU6922 lncRNA downstream 1026883 33104725 ~ 33105215 (-) True G5645
TU7145 lncRNA upstream 156669 34292269 ~ 34292496 (-) True G5805
TU7222 lncRNA upstream 737013 34872613 ~ 34897907 (-) True G5869
TU7223 lncRNA upstream 741900 34877500 ~ 34878219 (-) True G5870
TU7287 lncRNA upstream 767766 34903366 ~ 34906973 (-) True G5929
TU7335 lncRNA upstream 1209518 35345118 ~ 35348267 (-) False AMCG00004143
AMCG00004123 mRNA downstream 1103 34078179 ~ 34130995 (-) True AMCG00004123
AMCG00004120 mRNA downstream 100551 34015368 ~ 34031547 (-) True AMCG00004120
AMCG00004119 mRNA downstream 163441 33949967 ~ 33968657 (-) True AMCG00004119
AMCG00004118 mRNA downstream 192973 33928514 ~ 33939125 (-) True AMCG00004118
AMCG00004117 mRNA downstream 233093 33896046 ~ 33899005 (-) True AMCG00004117
AMCG00004129 mRNA upstream 584764 34720364 ~ 34738000 (-) True AMCG00004129
AMCG00004131 mRNA upstream 636900 34772500 ~ 34794138 (-) True AMCG00004131
AMCG00004130 mRNA upstream 700823 34836423 ~ 34849187 (-) True AMCG00004130
AMCG00004134 mRNA upstream 785011 34920611 ~ 34924533 (-) True AMCG00004134
AMCG00004133 mRNA upstream 811274 34946874 ~ 34949603 (-) True AMCG00004133
TU6815 other downstream 1535691 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 1705535 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 1822188 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 7262520 26865154 ~ 26869578 (-) False AMCG00003967
TU5513 other downstream 8230486 25897934 ~ 25901612 (-) True G4521
TU7224 other upstream 756301 34891901 ~ 34892613 (-) True G5871
TU7292 other upstream 825360 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 1219021 35354621 ~ 35414446 (-) False AMCG00004143
TU7893 other upstream 3232385 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 5706335 39841935 ~ 39849123 (-) True G6792

Expression Profile