RNA id: TU7220


Basic Information

Item Value
RNA id TU7220
length 1434
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G5867
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34894102 ~ 34895661 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatcttgtACAACTACTTGTCGAAATCCTTGAAAAATGCATTCGGAAGAGGAACCGTGCAAATGCTATAGCAGTCTCCATTCTTTAAAACTACAATCTGACAAGAAAAGATTGCATAGATACTTTCTCGGTCAAAGGTAAAGACGCTGAATGCTGAAGCACAAATGTGTCCCAGTGAATGCTTTaagcttcaccctacaccctcgctcactcaagtgcactctgtgacgtcagcacaattCTATAAGATTACGAGAGATCCACACAGCAGTCATCCAAGACTACAACAGGTTTGGAGATATCAGCAGTTTGATTTTGGCCACTATTGATAGGGTACTTAAAAGGCACAAAGTGGGAATGAAGCAACTTTACAAGGTCCCAATTCAAAGAAACAGTGAGAGTGTGAAGGAGTCTAGACTCCAGTATGTACAGAGAATAATGGAGCTTGAAGCAAACGCAAGACCCCATACATTCATGTGGATGAAGCCGGCTTCAACCTTTCCAAAGTAGGGAGACGAGGGAGGAACCTCAATGGTAAGAGGGCCACTGTAAATGTGCCAGGGCAAAGAAGTGCAAACATCACCTTGTGTGCTGCTGTCTCTAACGATGGTGTTCTTTGCCACATCCCTAAAACTGGCACATACAATACAGAACATCTCCTCACATTTCTTGATGCATTGCACCAGAGAGTGGTACCACCAGAAGAGAGAGTGCTGGTGAGGCCTGACATGTCCCACTTCGCCATCATATGGGACAACGGTGCTTTCCATAACTCCCGGCTGGTTTCTGAATGGTTTGTAGCCCACCCATGACTGATGAGGCAGTTTCTCCCTCCATACTCTCCTTTTCTCAATCCAATCAAAGAATTCTTCTCTGCGTGGAGGTGGAAAGTATACGATTACCGTTCACATGACCAGATGTCTCTCCTAGATGGAATGAATGCCAGTTGTCTGGTTATCATTGCAGAGGACAGCCAAGCGTGGATGCACCATGCAAGGAGATTCTTTCCTCGCTGTATTGCGAGGGAAAACATCCAGTGCAATGCTGACAAAAACATGTGACCTGATTGACAAGAACGAATGGACTAAATgtgttgtatactgtattttctgttgccttttttggcattgctttatttttcatagcttggtgtgttatttttattctctgCATATACAGcagcattgcattttaaaggacaaaattaaaaaggtgaaataaagcctttcttttgtttctgaatCTCCTGAGTGACATTCTGTTTGCATTGGTCATCTTTGGTAAAttcattttaggaaaaaaagaatacagCCTATGCTTCTGATGTTTACTTGCCTTTTATGGTACATACTATAACAACAAAGTATCAACAAATGGCAGACATATAAAAGAGGGTTAACCATGTTGGGGTATATTGATAGTTTTATTCATTGGG

Function

GO:

id name namespace
GO:0030119 AP-type membrane coat adaptor complex cellular_component
GO:0030123 AP-3 adaptor complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7148 lncRNA upstream 512003 34381868 ~ 34382099 (+) True G5808
TU7144 lncRNA upstream 601601 34292271 ~ 34292501 (+) True G5804
TU7123 lncRNA upstream 803980 34081826 ~ 34090122 (+) True G5788
TU7121 lncRNA upstream 813317 34078351 ~ 34080785 (+) True G5787
TU7098 lncRNA upstream 1000959 33892474 ~ 33893143 (+) True G5768
TU7229 lncRNA downstream 3975 34899636 ~ 35350027 (+) True G5875
TU7270 lncRNA downstream 405442 35301103 ~ 35306949 (+) True G5914
TU7378 lncRNA downstream 560015 35455676 ~ 35455887 (+) True G6002
TU7383 lncRNA downstream 570201 35465862 ~ 35466655 (+) True G6007
TU7448 lncRNA downstream 924594 35820255 ~ 35820483 (+) True G6067
AMCG00004138 mRNA upstream 25222 34867992 ~ 34868880 (+) False AMCG00004138
AMCG00004128 mRNA upstream 59987 34820168 ~ 34834115 (+) True AMCG00004128
AMCG00004127 mRNA upstream 85680 34798389 ~ 34808422 (+) True AMCG00004127
AMCG00004126 mRNA upstream 169492 34695403 ~ 34724610 (+) True AMCG00004126
AMCG00004124 mRNA upstream 208312 34666392 ~ 34685790 (+) True AMCG00004124
AMCG00004137 mRNA downstream 68805 34964466 ~ 34977633 (+) True AMCG00004137
AMCG00004139 mRNA downstream 276815 35172476 ~ 35173032 (+) True AMCG00004139
AMCG00004140 mRNA downstream 311870 35207531 ~ 35210874 (+) True AMCG00004140
AMCG00004141 mRNA downstream 343571 35239232 ~ 35248925 (+) True AMCG00004141
AMCG00004149 mRNA downstream 461761 35357422 ~ 35359998 (+) True AMCG00004149
TU7209 other upstream 23782 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 1762916 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 3999275 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 4622578 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 6790891 28062363 ~ 28103211 (+) True G4831
TU7437 other downstream 856872 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 1376531 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 1878340 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 1965886 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 2103696 36999357 ~ 37000158 (+) True G6369

Expression Profile