RNA id: TU7224


Basic Information

Item Value
RNA id TU7224
length 386
RNA type TUCP
GC content 0.57
exon number 2
gene id G5871
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34891901 ~ 34892613 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGGCTTCCCTAGCCTGGCGTGACCCGCCCCCTTGGCCACTTCGCATGGTGTACAGCTCCAAACAAACCTGTCCGGTGTGTGAGGCTGATTCGCAATGCTGACCGCACTGAGAGGTTGTGCTGCTTTAGCTGACAAACAGCTGTTCAGACAGATTCGTGCAGCACAGCTGTATCCGGTCAGCCACGCCAGACTCTTCCGGACAGCGACCTGCTCACAGGGGGCCGAGCTGCACCCACAGTGGGTAGCCTTGGCAAAGAAGCAGCTCAAAGGCAAAGACCCCGAGGATCTCATATGGCACACGCCTGAAGGCATTCAGATCAAGCCGGTTTTCACTCGGGAAGACTCCGAAAATGTCCCGAATGAACTACCAGGCGTGCATCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7223 lncRNA downstream 13682 34877500 ~ 34878219 (-) True G5870
TU7145 lncRNA downstream 599405 34292269 ~ 34292496 (-) True G5805
TU7119 lncRNA downstream 872390 34015437 ~ 34019511 (-) False AMCG00004120
TU7105 lncRNA downstream 973580 33875441 ~ 33918321 (-) True AMCG00004116
TU7015 lncRNA downstream 1264394 33626309 ~ 33627507 (-) True G5721
TU7287 lncRNA upstream 10753 34903366 ~ 34906973 (-) True G5929
TU7335 lncRNA upstream 452505 35345118 ~ 35348267 (-) False AMCG00004143
TU7385 lncRNA upstream 580255 35472868 ~ 35475341 (-) True G6009
TU7408 lncRNA upstream 775424 35668037 ~ 35668538 (-) True G6030
TU7412 lncRNA upstream 779838 35672451 ~ 35672679 (-) True G6034
AMCG00004130 mRNA downstream 42714 34836423 ~ 34849187 (-) True AMCG00004130
AMCG00004131 mRNA downstream 97763 34772500 ~ 34794138 (-) True AMCG00004131
AMCG00004129 mRNA downstream 153901 34720364 ~ 34738000 (-) True AMCG00004129
AMCG00004123 mRNA downstream 760906 34078179 ~ 34130995 (-) True AMCG00004123
AMCG00004120 mRNA downstream 860354 34015368 ~ 34031547 (-) True AMCG00004120
AMCG00004134 mRNA upstream 27998 34920611 ~ 34924533 (-) True AMCG00004134
AMCG00004133 mRNA upstream 54261 34946874 ~ 34949603 (-) True AMCG00004133
AMCG00004132 mRNA upstream 62093 34954706 ~ 34963885 (-) True AMCG00004132
AMCG00004135 mRNA upstream 167449 35060062 ~ 35069488 (-) True AMCG00004135
AMCG00004136 mRNA upstream 187992 35080605 ~ 35086956 (-) True AMCG00004136
TU7138 other downstream 756301 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 2295494 32593627 ~ 32596407 (-) True G5566
TU6786 other downstream 2465338 32407802 ~ 32426563 (-) True G5540
TU6736 other downstream 2581991 32309480 ~ 32309910 (-) True G5502
TU5805 other downstream 8022323 26865154 ~ 26869578 (-) False AMCG00003967
TU7292 other upstream 68347 34960960 ~ 34963839 (-) False AMCG00004132
TU7345 other upstream 462008 35354621 ~ 35414446 (-) False AMCG00004143
TU7893 other upstream 2475372 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4949322 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 7484113 42376726 ~ 42379406 (-) True AMCG00004313

Expression Profile