RNA id: TU7415


Basic Information

Item Value
RNA id TU7415
length 268
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G6037
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35673946 ~ 35676120 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTgctacaatatgtattttaaccATAAGTGTTGATTGTAGTTGGCTGTCCTGGAAATTGCTTCGTCATATAATGACACTGACTCCAACAGCTCAAATGGATCAGAAGTGAACCAGGCTCTTTGGCAGCTGCAGTGGATGCCTTTCCTGTGGCAGAAACCCAatggtgcatgtgtccctgcagtgTCAGCGAGATAAAACTGCTTTTCTGAATATGCTGTGAGTGACCCTGAGCATGACCCTGATGCATGATTGCAAGCTATGTGGCAG

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7412 lncRNA downstream 1267 35672451 ~ 35672679 (-) True G6034
TU7408 lncRNA downstream 5408 35668037 ~ 35668538 (-) True G6030
TU7385 lncRNA downstream 198605 35472868 ~ 35475341 (-) True G6009
TU7335 lncRNA downstream 325679 35345118 ~ 35348267 (-) False AMCG00004143
TU7287 lncRNA downstream 766973 34903366 ~ 34906973 (-) True G5929
TU7449 lncRNA upstream 144138 35820258 ~ 35820483 (-) True G6068
TU7459 lncRNA upstream 303319 35979439 ~ 35979839 (-) True G6077
TU7488 lncRNA upstream 485527 36161647 ~ 36163434 (-) True G6103
TU7516 lncRNA upstream 580869 36256989 ~ 36257189 (-) True G6129
TU7523 lncRNA upstream 592994 36269114 ~ 36270818 (-) True G6136
AMCG00004154 mRNA downstream 30841 35642527 ~ 35643105 (-) True AMCG00004154
AMCG00004153 mRNA downstream 142676 35520023 ~ 35531270 (-) True AMCG00004153
AMCG00004152 mRNA downstream 178027 35476558 ~ 35495919 (-) True AMCG00004152
AMCG00004148 mRNA downstream 250716 35419864 ~ 35423230 (-) True AMCG00004148
AMCG00004146 mRNA downstream 260198 35407247 ~ 35413748 (-) True AMCG00004146
AMCG00004156 mRNA upstream 9135 35685255 ~ 35691933 (-) True AMCG00004156
AMCG00004155 mRNA upstream 20502 35696622 ~ 35720187 (-) True AMCG00004155
AMCG00004162 mRNA upstream 491181 36167301 ~ 36172699 (-) True AMCG00004162
AMCG00004169 mRNA upstream 601838 36277958 ~ 36285408 (-) True AMCG00004169
AMCG00004168 mRNA upstream 612275 36288395 ~ 36300239 (-) True AMCG00004168
TU7345 other downstream 259500 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 710107 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 781333 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 1538346 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 3077539 32593627 ~ 32596407 (-) True G5566
TU7893 other upstream 1691865 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 4165815 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 6700606 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 8844794 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 10630806 46306926 ~ 46307319 (-) True G7868

Expression Profile