RNA id: TU7595


Basic Information

Item Value
RNA id TU7595
length 1318
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G6199
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36400165 ~ 36401482 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGAGAGGGGGCACATAGCATCAATGTAGCAGATCTGTTGTCTGCGTCTGAAATGGGCTCTGGGTGGCACAATAATCTGtgatattcattcattcagtatTAGTCTGGGAAAGTAGGCTACTTCTTATATGTGATATAGTCTGTGTTGGACAAACTGCTATTGTCAGTCTCCCTGCACCGTCTTCAGTCCGGAGAGCGCAGTCAGTAATACTATAGGATACTGTATTTACAACCGTTGAACATTTTGCATGAAATGCgtaaaaaaacaacccaaaacatGATTGTATATAGCAggtgcattttttaaaaagcgCGCttctatataatttatattatatgtattataaattaaagtACATTTCTAGAGCTAAAGGTGCAATATATAGAGCTGTATTTAAATAAGAGATTGTGCACACATACGTGTAATAAAACTACATTAAGCCGAATTGCCATGAACAGTGGAGCCAGTTTTTATCCTAAAAAatagcacaaacaaacaaaggcgAAATGTAGACAATGTAATCAGCCGGAGGTAGCCTTAGGATTAATTAGAATGAGATTCATAATAAAtagtataatatatgtataccCTATGCATGAAACAATAATTGCTTGCGGATTGCAGACTCACTACTTCGACGTTTAACCTCATATAATACTTTTGTAAAACCGAGGTTGATACCGGAAAACAtagcctaattaaataaaacaacaacacgcTCTTGTATCGTGTGAAATACAGCCTAACATAAAGTGAAGAACATATGCACGCAAAAACAGACGAGACCAGGAGCAGTTGATGCTCTACAGTCGTGCGTCCTCCCCGTGTTCGCGACTGAGGCCTACAGACGGCACGCACCCTGGCTGTGAAGAGCAGGCTGCTGGATTCAGGGCTCACATGGACCTGCCCAGGCGTTATGTATCAATCTCTATACGAATACGCTACACAGAATAGCAGCCCAGGTTACTGAGCTCTCCGTGCTTTGTGTAACATGTACAGGAATTAAAAGTGATGCGACGGCCTTTCAAAGGACACTATCGCCTTTATACTGGACAGACTGCAGTAGGATGCTTTTGTGTTTTCGCAggcatttacatatttgtaatacatGTTTCCATTTGAATGACTGTAACGAATATCCCATAATAaaaccatatatttatattctttttttatagcattaagaacattttttctctgaaaataaacagaatttgAAGTCGTCCAGCCTAATTGAATATCCAGTCCTgacttatttattatattatttagtaAAACATTTCGTGGTTGAGTGTTGTATAAAGGTGCCCACTTTT

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05032 Morphine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7593 lncRNA downstream 9659 36386362 ~ 36390506 (-) True G6197
TU7523 lncRNA downstream 129347 36269114 ~ 36270818 (-) True G6136
TU7516 lncRNA downstream 142976 36256989 ~ 36257189 (-) True G6129
TU7488 lncRNA downstream 236731 36161647 ~ 36163434 (-) True G6103
TU7459 lncRNA downstream 420326 35979439 ~ 35979839 (-) True G6077
TU7596 lncRNA upstream 910 36402392 ~ 36403386 (-) True G6200
TU7632 lncRNA upstream 94290 36495772 ~ 36540841 (-) False AMCG00004178
TU7639 lncRNA upstream 152425 36553907 ~ 36555108 (-) True G6241
TU7641 lncRNA upstream 154624 36556106 ~ 36557331 (-) True G6243
TU7736 lncRNA upstream 364090 36765572 ~ 36765809 (-) True G6309
AMCG00004171 mRNA downstream 55476 36340174 ~ 36344689 (-) True AMCG00004171
AMCG00004172 mRNA downstream 60687 36312921 ~ 36339478 (-) True AMCG00004172
AMCG00004168 mRNA downstream 99926 36288395 ~ 36300239 (-) True AMCG00004168
AMCG00004169 mRNA downstream 114757 36277958 ~ 36285408 (-) True AMCG00004169
AMCG00004162 mRNA downstream 227466 36167301 ~ 36172699 (-) True AMCG00004162
AMCG00004175 mRNA upstream 93619 36495101 ~ 36495451 (-) True AMCG00004175
AMCG00004178 mRNA upstream 136229 36537711 ~ 36539790 (-) True AMCG00004178
AMCG00004177 mRNA upstream 173770 36575252 ~ 36577556 (-) True AMCG00004177
AMCG00004185 mRNA upstream 244531 36646013 ~ 36663669 (-) True AMCG00004185
AMCG00004181 mRNA upstream 268833 36670315 ~ 36677129 (-) True AMCG00004181
TU7345 other downstream 985719 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 1436326 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 1507552 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 2264565 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 3803758 32593627 ~ 32596407 (-) True G5566
TU7893 other upstream 966503 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 3440453 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 5975244 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 8119432 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 9905444 46306926 ~ 46307319 (-) True G7868

Expression Profile