RNA id: TU7742


Basic Information

Item Value
RNA id TU7742
length 1645
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G6315
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36774985 ~ 36776982 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGTACACAAAAGACCAGGGGTCAGACCTTGGCCAGCCATTTTTATCGCTTTCTGTTCAGTGTACTGCCAGCAGTCATGATCCTCGTCAGACGTGCTTGTGCAGGCAGGAAGAACACCAGTCCTACCAGGCAGGTGATGCTGGGATCTGATGGGACTATGTCTTTCTGGAAAATTGTTTTCCTTGCTTGCTCATTTCAGCTGCCTGCATGACCAATGATGACCGTCTATGCTCAGGACAGTGTGTCCAGACCCTTATTTTCTGTACCAGTTAGGGGAAACAGCTGAGGCATGCAGACACTGTAAGAGCTGTGCCAGGGAATGGTGCCCAAGACAAAAATGCCCTTTTCTGTGATGCCCATTTCCTGTGTGTCAAGAAGATTGATTAGCCCACAATCTAGTTCTAATGTACCTTATAAATAACTACAGTCACACTGTCATTTTCTTAAACATttgttagtatttatttttgtaatctattttctttaaaatagaaAAGCCATGATTATTGTgctttcattacaaaatgttagttttttttcttcctgcagcACACAggagaaaatataaatgaagaCAGCTGCAGagtaaatatttcagttgtATCCGTGCAATGCTGTGACAGGCTGCCCTGGTCCTGTAGTTTCACATCATCTCTATTGTTGATACACATGGAAtctagattaattaattaaatttacttATATCCTGATTTTCCGTAGTCAGGgttaattcaaattattaaattacaaattacaattaaatcaaaattctCTTCAGTATCACTCTTAAAAAACTCATCAGTGTTGCGTTTAGTCTGGTCTCTCAAAGGGACAGGAGAACCCTTGCTGGCCATTAGACTGACCTCACCTCATGCAGTGTATGTGAtgtgaggaggaaaaaaaaagataacagtGCTAGGTTATGTGCTAATGTCTCTAATACAGCGCAATGCTTTGAAAGTATATTACTCGCTCCCGGACAGTTTCTTCATGAAGTTCTGGATATCCTGGGCCAGAAGCTCCGGCTCCTCGAAAGCAGCAAAATGCCCCCCCCGCTCCATGTAGTTGAAGGACACCAGATTCAGGTACTTCTGCTCGGCCCACAGCCGGGGCGTGTGCAGCAGCTCATTGGGGAAGCAGGCCATCGCTGTCGGCACCCGCACTGGCAGCTTTCATGTTTTCGAGTACCAATTCCTTTCCCAAGGTTTTCCTTGTAAAACCGCATTGATGAAATGATGCAGCCTGTCACCCAGTAAATCATCACGTTGGTCAAAAGGTCATCCAGGGAAAATTTCCTGCAAATGCAATTCATTAAGAGCgaataaaacacaaagagtGATGACATCAATAAAGTATCATTAACTAGGCTGATGTTCTTGACATGTGTGGCTCTATTTTAAGTTTTGAACAAATTGAAACTTGCCTTCTGCATAACAGCATAAATGCAATAAGCTACTTGCTTAggcaaagaacaaaacaagactGATGCATCTTCCACTATAAACTAAAATCAGGAATGAGTGGATATTGGATACCTTTCCAGTCCTCCATCTTCAAGGTTCCTGAACTGTGGGTCGGTCCAGGTGGAGAATTTCTCCAGGATGTAGGCGGCCAGCCCAACTGGAGAGTCATTCAGAGCCCGAC

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7737 lncRNA upstream 6962 36767737 ~ 36768023 (+) True G6310
TU7686 lncRNA upstream 67550 36705670 ~ 36707435 (+) True G6277
TU7685 lncRNA upstream 70226 36704508 ~ 36704759 (+) True G6276
TU7684 lncRNA upstream 72017 36702705 ~ 36702968 (+) True G6275
TU7683 lncRNA upstream 72536 36702213 ~ 36702449 (+) True G6274
TU7743 lncRNA downstream 147 36777129 ~ 36777523 (+) True G6316
TU7744 lncRNA downstream 952 36777934 ~ 36778165 (+) True G6317
TU7745 lncRNA downstream 1386 36778368 ~ 36778577 (+) True G6318
TU7746 lncRNA downstream 1898 36778880 ~ 36779150 (+) True G6319
TU7747 lncRNA downstream 3579 36780561 ~ 36781417 (+) True G6320
AMCG00004186 mRNA upstream 9779 36748856 ~ 36765206 (+) True AMCG00004186
AMCG00004180 mRNA upstream 28920 36742627 ~ 36746065 (+) True AMCG00004180
AMCG00004179 mRNA upstream 84701 36689380 ~ 36690284 (+) False AMCG00004179
AMCG00004176 mRNA upstream 105337 36663802 ~ 36669648 (+) True AMCG00004176
AMCG00004174 mRNA upstream 272869 36501826 ~ 36502116 (+) True AMCG00004174
AMCG00004187 mRNA downstream 13452 36790434 ~ 36873869 (+) True AMCG00004187
AMCG00004192 mRNA downstream 107376 36884358 ~ 36904094 (+) True AMCG00004192
AMCG00004191 mRNA downstream 135664 36912646 ~ 36918990 (+) True AMCG00004191
AMCG00004190 mRNA downstream 159922 36936904 ~ 36939547 (+) True AMCG00004190
AMCG00004193 mRNA downstream 421941 37198923 ~ 37231208 (+) True AMCG00004193
TU7741 other upstream 462 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 500055 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 1008805 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1904665 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 3643799 33130120 ~ 33131186 (+) True G5642
TU7756 other downstream 84565 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 222375 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 4682594 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 5435528 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 5911797 42688779 ~ 42691109 (+) True G7329

Expression Profile