RNA id: TU7747



Basic Information


Item Value
RNA id TU7747
length 857
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G6320
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36780561 ~ 36781417 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGACCCAGGTCTCCTGGTGAAAGGCTAACACTTCAGAAGCTGTCAGATCCATGTCTCCTAGTATTTGATGATGCTGTACAGCACCCACTCCTGACACTAAATCTATTCCTGACAGCTACTGGAGATCCCAACtcccctttctttctgtgtgggGTCCTTTTTCTATAGCAATTTGAAAGCCAAGTGTGCAGATGAGAGCATTCAATCCTTTGCTGTTAAATGTTCCTTTAGCAAAGAGTCGGTTAAAAAAGAAGCACATGATACAAATGTTAACAATGACTATATTCAgttaaagcaaaaaacaaacaaaaaaaacgatgTGCTTTTGCATTTGACAGTGGCCTGGATTATCATGCGTATTGAAGGAAAACAGTGACACTTGTTGATATGCGCTACGGATTTGTGTTCAGCAGTGAAACCACTCTTTCTTCAATATGGCAAACTGTTGTGACATTtcatccataattgctgatctcaaaaatacaattgctgatatcagtaATTAATGACAATTTGGAAGAGAttcaaattttacattttgtgatcGTAACCACACTGACCTGTAATCCCACAATTAAAACCGTTACTTTGATTACAAAAGTAACTGCGGCAGACACTCAATACCCCCCCCGGAATAACTATACATGTCATTATGTTATTGTTAAAcacaattcataataatatttcaataaatgaatacagtatAGTGTAAAAGCCTGGGGTTAGGTGCAGAGTGAATATGATTTCACTATTTAAACATACACCTTGCATAACACAGCGAGCTAACTATTCTCTGGTCTGTATGCATTCAGAATAATCAATACTCTCTACTTATCATTTGATTTAtcatccatttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU7746 lncRNA upstream 1411 36778880 ~ 36779150 (+) True G6319
TU7745 lncRNA upstream 1984 36778368 ~ 36778577 (+) True G6318
TU7744 lncRNA upstream 2396 36777934 ~ 36778165 (+) True G6317
TU7743 lncRNA upstream 3038 36777129 ~ 36777523 (+) True G6316
TU7742 lncRNA upstream 3579 36774985 ~ 36776982 (+) True G6315
TU7748 lncRNA downstream 595 36782012 ~ 36782230 (+) True G6321
TU7820 lncRNA downstream 246622 37028039 ~ 37028246 (+) True G6383
TU7844 lncRNA downstream 376759 37158176 ~ 37265504 (+) True G6405
TU7861 lncRNA downstream 534228 37315645 ~ 37318146 (+) True G6421
TU7870 lncRNA downstream 556109 37337526 ~ 37341014 (+) True G6427
AMCG00004186 mRNA upstream 15355 36748856 ~ 36765206 (+) True AMCG00004186
AMCG00004180 mRNA upstream 34496 36742627 ~ 36746065 (+) True AMCG00004180
AMCG00004179 mRNA upstream 90277 36689380 ~ 36690284 (+) False AMCG00004179
AMCG00004176 mRNA upstream 110913 36663802 ~ 36669648 (+) True AMCG00004176
AMCG00004174 mRNA upstream 278445 36501826 ~ 36502116 (+) True AMCG00004174
AMCG00004187 mRNA downstream 9017 36790434 ~ 36873869 (+) True AMCG00004187
AMCG00004192 mRNA downstream 102941 36884358 ~ 36904094 (+) True AMCG00004192
AMCG00004191 mRNA downstream 131229 36912646 ~ 36918990 (+) True AMCG00004191
AMCG00004190 mRNA downstream 155487 36936904 ~ 36939547 (+) True AMCG00004190
AMCG00004193 mRNA downstream 417506 37198923 ~ 37231208 (+) True AMCG00004193
TU7741 other upstream 6038 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 505631 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 1014381 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1910241 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 3649375 33130120 ~ 33131186 (+) True G5642
TU7756 other downstream 80130 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 217940 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 4678159 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 5431093 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 5907362 42688779 ~ 42691109 (+) True G7329

Expression Profile