RNA id: TU7861


Basic Information

Item Value
RNA id TU7861
length 2502
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G6421
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37315645 ~ 37318146 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caagatttatttgttttgaaaacaataattcatgCAATTTTACAGCACTTGTAAACACAATCATTGGGGATAGATGTTAAATGTGTATTGCGTCACAATAATCTATCACTTACATTATAAAATGGAATGTTTTTCAGCCCAAGGTCCCTTTAATTCATATAGAGAAGCTGAGGAATCTATGCTTCTTTTGAATGTTATCTGGGTGACATCATATATTTATGGTTTGAATCATACTATCAACTGTGTGACAAAGGGAACTGTTCAAGTAACACAGACGTTTATAGGAATGTAATTTATTGCTCCAACAGGAAGAAAAAGGCAATGTAGTCAGGAAGCACGACAGCATAATCGCCATCAGCAAGGATTGTCTTCATTAAATTGGTTTTAAAGTGAACACGGTCAGCTACTTTTGAGATCTCTCTCACACAACCCAGCCCACCAAAATGAGCACCATGAAATCTCTCTTAAAATAGAAGCTTTAGAAAAGAACACAATTTACAGAAAATTAGTAAACCATTTTTTCTACTTTGGATTTTATTTGCTTCAACTCTTACTATGGAAAGAGACTTCCAGTTACATTAATTACGAAGAAAACATAATGAGAGAGAAATGGTAGTACACAAACagacacgcgcacacacacaaggtCAGGGATACAGAAATGACCCCTACACATTAGTTCACAACTAAGGGGGCACCTACAAAACTTGCTGATATCTGAGGACATAAGGATGATCATTTATCAatcattcataattcataacaaACGCAGCACAGACCAGTATCCAGAACAACTATATAGCTAAACTGCTAGCAATGCAGCAGAACAGGCCAAGGCATACAAATGGAAACAACTAAGAATCATTATTTCACCTTCCAATGCTAAGTATTTCCAAACAAGCATTCATCTTGCAGCTGATTGCAATTTCACAGCAAATCTCACCACTGCAAGGTAATCAGTAAACCGATGTCCTCAAGAGTCCTGTATGACACTGAGTTGTAGACCATCTTAAATGTCTAAAACAAGACAATCTATAATCCCAAACCATAGACAGAAGCTAGTTGAAAACCTGGAGGTGATAACCTGAAGGTTTGcggttattttaaataagcacCTAGAGGAGATACTTGAAATAGAAAGTACATTTCTAAAGAAGCAATATTCCTTTTTATGTATCTTTATCAAAATGATCACATAGACTCCGCCAGACTGAACCTAGGTTACTAATAATCATAGAAAATAACAGTAGCATATTTCATAtctgattttcatttaaaattccaTTTGTCCCCATCATTTTCCACTGCCATTGTCAATGGAGTGCAGATTTAATTGGAGGTACAAATCAGGGTCATCACTTAAGTTTGTGCATTCAGAGTATATCATGACAGGCTGTCTGCATGTTGCCATTTACATACCTCCCAGGCAAAAATAAACTATCCATCTGCATTTGAATCTCAATATATGATGAACAAAGCTACAACAGTAGcaatcactttattttatttacatacacaacTACTGATTTGCCCAATCTAAGTAATTTTGACACCAATTTCAAATATAGCGCTAATGTTACCAATCGTTCATGTTTAAGGCTTCCCCTTGAAGCAGTTTTCTTGAGAATGTCAGTCACCCTAAAATAATTAAccattacatttcatatagtgtcaaaatcataacaaaacaaaacacattattgtgtatACTTACAATGTCACTGGCAGTCAAAAACCCTTCTCTctcaatattgtttattataaacTCCATGTACAAGGATGGCCTAGATTATCAGTAGTTATCCTCTAAATGCCTTTAAACAAATTATCAACTTTTCCCACAAAGGTTATAACCCTAGAACTGCCTTGGTTTGCTTTTATCTGgcaatgtagtttattttatggggggggggtgcattaTATCCCAATTATTAGACTAGTGGATTTCACAAGATTCTCATTTCTCATGAAAATGTACCGGCTCAGAAAAGATTAGGCTCTGAATGGGCAGAATAGCATGAAAGATTTATAGATTAGTTAAGCAAACCTGCAGAATTACCAGctttagaaaaaactaaaaaggatATAAAGCATTGTATTGAGTATATGTGAAGTAACTGATGACTGTGGTTAACATGCCAGCGCCAATTTGGCAGAGCCCTTTTTCTCCTTGAGGACTGAAATTGTAAGGCAAAATAATCTATTCAAAAAGGAGTGGTTTCACCAATCAAActcaaatatttatgtttattttataaaccacTGATGagtcttttgttattttctttttcttttgggggTGTTGGACTTATATTCAGGAAAATACACTTATTTTGGATGctctgaaaaaacatttcacattatcTGAAGGACAAAGGAGcgagtgtgtttttgtttctaccTAAAAAAGTATTAGTAGACAGTATAATTATCTCAAgcctttactatattttatatatgttaaCACTTGTATTTTAGGATTTATACAGGCACAATAGTGTT

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7844 lncRNA upstream 50141 37158176 ~ 37265504 (+) True G6405
TU7820 lncRNA upstream 287399 37028039 ~ 37028246 (+) True G6383
TU7748 lncRNA upstream 533415 36782012 ~ 36782230 (+) True G6321
TU7747 lncRNA upstream 534228 36780561 ~ 36781417 (+) True G6320
TU7746 lncRNA upstream 536495 36778880 ~ 36779150 (+) True G6319
TU7870 lncRNA downstream 19380 37337526 ~ 37341014 (+) True G6427
TU7873 lncRNA downstream 25915 37344061 ~ 37344445 (+) True G6428
TU7929 lncRNA downstream 196736 37514882 ~ 37516498 (+) True G6471
TU7999 lncRNA downstream 526363 37844509 ~ 37847720 (+) True AMCG00004210
TU8059 lncRNA downstream 937083 38255229 ~ 38255483 (+) True G6573
AMCG00004193 mRNA upstream 84437 37198923 ~ 37231208 (+) True AMCG00004193
AMCG00004190 mRNA upstream 376098 36936904 ~ 36939547 (+) True AMCG00004190
AMCG00004191 mRNA upstream 396655 36912646 ~ 36918990 (+) True AMCG00004191
AMCG00004192 mRNA upstream 411551 36884358 ~ 36904094 (+) True AMCG00004192
AMCG00004187 mRNA upstream 441776 36790434 ~ 36873869 (+) True AMCG00004187
AMCG00004197 mRNA downstream 75956 37394102 ~ 37417947 (+) True AMCG00004197
AMCG00004199 mRNA downstream 109303 37427449 ~ 37445287 (+) True AMCG00004199
AMCG00004206 mRNA downstream 158143 37476289 ~ 37478687 (+) True AMCG00004206
AMCG00004205 mRNA downstream 160684 37478830 ~ 37485632 (+) True AMCG00004205
AMCG00004198 mRNA downstream 211616 37529762 ~ 37545788 (+) True AMCG00004198
TU7800 other upstream 315487 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 423899 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 541122 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 1040715 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 1549465 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 4141430 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 4894364 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 5370633 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 8643864 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 10828742 48146888 ~ 48147156 (+) True G7999

Expression Profile