RNA id: TU7870



Basic Information


Item Value
RNA id TU7870
length 561
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G6427
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37337526 ~ 37341014 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGGCAGGCTTTGCAGATGGCAATGATGGGAGTGGCTTTCCGTCTTCTTCTCTTCAGACTCGGAGCTGGGCAACCGTACTTTTAGCTTAACTGATCCTTCTCTGAATATGTCTCCAAAGCCCACTCCTCTGACCTTTTTTGGCTGAGCTATTCCATTACCAGTCCCGGGAGAGGCGAGTGGAGAGGTAGGGGTGCTGGGTGCTACTAAGAGGCTGTCTTTAATCATGATCTCTGGTTCATCTGAAACTTCATTCGTTTCATGGTCTTCGGTTACTTCAATTTCTTTGACAAAATTAGATGGAAACAATCCAGATTTTCCATTCATCGTTCCACTCCACCAGCCCTCTTCGACctCTTCATTAATATCGATAATGTCTCCAACTTTCAGCTCCAGCTCATCCTCATTCTGTGGCACGTATTCAAAGAGAGCTTTGCATTGCCTCTTCTTTGATcctgcaaataaaatgtgaatcacatgaaatttatataaaaataaaaaaacaccttttcctTATGGTGCTGGTTAAGAGAGAACCATCAGAAAAACTCTTTACAGGTCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU7861 lncRNA upstream 19380 37315645 ~ 37318146 (+) True G6421
TU7844 lncRNA upstream 72022 37158176 ~ 37265504 (+) True G6405
TU7820 lncRNA upstream 309280 37028039 ~ 37028246 (+) True G6383
TU7748 lncRNA upstream 555296 36782012 ~ 36782230 (+) True G6321
TU7747 lncRNA upstream 556109 36780561 ~ 36781417 (+) True G6320
TU7873 lncRNA downstream 3047 37344061 ~ 37344445 (+) True G6428
TU7929 lncRNA downstream 173868 37514882 ~ 37516498 (+) True G6471
TU7999 lncRNA downstream 503495 37844509 ~ 37847720 (+) True AMCG00004210
TU8059 lncRNA downstream 914215 38255229 ~ 38255483 (+) True G6573
TU8071 lncRNA downstream 1075584 38416598 ~ 38418776 (+) True G6585
AMCG00004193 mRNA upstream 106318 37198923 ~ 37231208 (+) True AMCG00004193
AMCG00004190 mRNA upstream 397979 36936904 ~ 36939547 (+) True AMCG00004190
AMCG00004191 mRNA upstream 418536 36912646 ~ 36918990 (+) True AMCG00004191
AMCG00004192 mRNA upstream 433432 36884358 ~ 36904094 (+) True AMCG00004192
AMCG00004187 mRNA upstream 463657 36790434 ~ 36873869 (+) True AMCG00004187
AMCG00004197 mRNA downstream 53088 37394102 ~ 37417947 (+) True AMCG00004197
AMCG00004199 mRNA downstream 86435 37427449 ~ 37445287 (+) True AMCG00004199
AMCG00004206 mRNA downstream 135275 37476289 ~ 37478687 (+) True AMCG00004206
AMCG00004205 mRNA downstream 137816 37478830 ~ 37485632 (+) True AMCG00004205
AMCG00004198 mRNA downstream 188748 37529762 ~ 37545788 (+) True AMCG00004198
TU7800 other upstream 337368 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 445780 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 563003 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 1062596 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 1571346 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 4118562 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 4871496 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 5347765 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 8620996 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 10805874 48146888 ~ 48147156 (+) True G7999

Expression Profile