RNA id: TU7888


Basic Information

Item Value
RNA id TU7888
length 2514
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G6437
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37315636 ~ 37318149 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTAACACTATTGTGCCTGTATAAATCCTAAAATACAAGTGttaacatatataaaatatagtaaaggcTTGAGATAATTATACTGTCTACTAATACTTTTTTAggtagaaacaaaaacacactcgCTCCTTTGTCCTTCAgataatgtgaaatgttttttcagagCATCCAAAATAAGTGTATTTTCCTGAATATAAGTCCAACAcccccaaaagaaaaagaaaataacaaaagactCATCAgtggtttataaaataaacataaatatttgagTTTGATTGGTGAAACCACTCCTTTTTGAATAGATTATTTTGCCTTACAATTTCAGTCCTCAAGGAGAAAAAGGGCTCTGCCAAATTGGCGCTGGCATGTTAACCACAGTCATCAGTTACTTCACATATACTCAATACAATGCTTTATatcctttttagttttttctaaagCTGGTAATTCTGCAGGTTTGCTTAACTAATCTATAAATCTTTCATGCTATTCTGCCCATTCAGAGCCTAATCTTTTCTGAGCCGGTACATTTTCATGAGAAATGAGAATCTTGTGAAATCCACTAGTCTAATAATTGGGATAtaatgcaccccccccccataaaataaactacattgcCAGATAAAAGCAAACCAAGGCAGTTCTAGGGTTATAACCTTTGTGGGAAAAGTTGATAATTTGTTTAAAGGCATTTAGAGGATAACTACTGATAATCTAGGCCATCCTTGTACATGGAgtttataataaacaatattgagAGAGAAGGGTTTTTGACTGCCAGTGACATTGTAAGTatacacaataatgtgttttgttttgttatgattttgacactatatgaaatgtaatggTTAATTATTTTAGGGTGACTGACATTCTCAAGAAAACTGCTTCAAGGGGAAGCCTTAAACATGAACGATTGGTAACATTAGCGCTATATTTGAAATTGGTGTCAAAATTACTTAGATTGGGCAAATCAGTAgttgtgtatgtaaataaaataaagtgattgCTACTGTTGTAGCTTTGTTCATCATATATTGAGATTCAAATGCAGATGGATAGTTTATTTTTGCCTGGGAGGTATGTAAATGGCAACATGCAGACAGCCTGTCATGATATACTCTGAATGCACAAACTTAAGTGATGACCCTGATTTGTACCTCCAATTAAATCTGCACTCCATTGACAATGGCAGTGGAAAATGATGGGGACAAAtggaattttaaatgaaaatcagaTATGAAATATGCTACTGTTATTTTCTATGATTATTAGTAACCTAGGTTCAGTCTGGCGGAGTCTATGTGATCATTTTGATAAAGATACATAAAAAGGAATATTGCTTCTTTAGAAATGTACTTTCTATTTCAAGTATCTCCTCTAGgtgcttatttaaaataaccgCAAACCTTCAGGTTATCACCTCCAGGTTTTCAACTAGCTTCTGTCTATGGTTTGGGATTATAGATTGTCTTGTTTTAGACATTTAAGATGGTCTACAACTCAGTGTCATACAGGACTCTTGAGGACATCGGTTTACTGATTACCTTGCAGTGGTGAGATTTGCTGTGAAATTGCAATCAGCTGCAAGATGAATGCTTGTTTGGAAATACTTAGCATTGGAAGGTGAAATAATGATTCTTAGTTGTTTCCATTTGTATGCCTTGGCCTGTTCTGCTGCATTGCTAGCAGTTTAGCTATATAGTTGTTCTGGATACTGGTCTGTGCTGCGTttgttatgaattatgaatgatTGATAAATGATCATCCTTATGTCCTCAGATATCAGCAAGTTTTGTAGGTGCCCCCTTAGTTGTGAACTAATGTGTAGGGGTCATTTCTGTATCCCTGaccttgtgtgtgtgcgcgtgtctGTTTGTGTACTACCATTTCTCTCTCATTATGTTTTCTTCGTAATTAATGTAACTGGAAGTCTCTTTCCATAGTAAGAGTTGAAGCAAATAAAATCCAAAGTAGAAAAAATGGTTTACTAATTTTCTGTAAATTGTGTTCTTTTCTAAAGCTTCTATTTTAAGAGAGATTTCATGGTGCTCATTTTGGTGGGCTGGGTTGTGTGAGAGAGATCTCAAAAGTAGCTGACCGTGTTCACTTTAAAACCAATTTAATGAAGACAATCCTTGCTGATGGCGATTATGCTGTCGTGCTTCCTGACTACATTGCCTTTTTCTTCCTGTTGGAGCAATAAATTACATTCCTATAAACGTCTGTGTTACTTGAACAGTTCCCTTTGTCACACAGTTGATAGTATGATTCAAACCATAAATATATGATGTCACCCAGATAACATTCAAAAGAAGCATAGATTCCTCAGCTTCTCTATATGAATTAAAGGGACCTTGGGCTGAAAAACATTCCATTTTATAATGTAAGTGATAGATTATTGTGACGCAATACACATTTAACATCTATCCCCAATGATTGTGTTTACAAGTGCTGTAAAATTGcatgaattattgttttcaaaacaaataaatcttgGATTTATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7821 lncRNA downstream 287392 37028028 ~ 37028244 (-) True G6384
TU7807 lncRNA downstream 394780 36912238 ~ 36920856 (-) True G6374
TU7751 lncRNA downstream 528514 36783743 ~ 36787122 (-) True AMCG00004188
TU7753 lncRNA downstream 534945 36780478 ~ 36780691 (-) True G6326
TU7752 lncRNA downstream 543535 36770732 ~ 36772101 (-) False AMCG00004189
TU7892 lncRNA upstream 31677 37349826 ~ 37381953 (-) False AMCG00004203
TU7897 lncRNA upstream 94540 37412689 ~ 37416547 (-) True G6445
TU7900 lncRNA upstream 94540 37412689 ~ 37416547 (-) False G6445
TU7919 lncRNA upstream 180049 37498198 ~ 37498446 (-) True G6462
TU7958 lncRNA upstream 249182 37567331 ~ 37569793 (-) True G6491
AMCG00004204 mRNA downstream 27301 37278386 ~ 37288335 (-) True AMCG00004204
AMCG00004196 mRNA downstream 262863 37050001 ~ 37052773 (-) True AMCG00004196
AMCG00004195 mRNA downstream 309685 36971391 ~ 37005951 (-) True AMCG00004195
AMCG00004194 mRNA downstream 354934 36921065 ~ 36960702 (-) True AMCG00004194
AMCG00004188 mRNA downstream 528734 36784823 ~ 36786902 (-) False AMCG00004188
AMCG00004203 mRNA upstream 5861 37324010 ~ 37350045 (-) True AMCG00004203
AMCG00004202 mRNA upstream 168808 37486957 ~ 37512998 (-) True AMCG00004202
AMCG00004201 mRNA upstream 206630 37524779 ~ 37528763 (-) True AMCG00004201
AMCG00004200 mRNA upstream 228226 37546375 ~ 37555523 (-) True AMCG00004200
AMCG00004207 mRNA upstream 289872 37608021 ~ 37632390 (-) True AMCG00004207
TU7345 other downstream 1901190 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 2351797 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 2423023 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 3180036 34132098 ~ 34135600 (-) True G5801
TU6815 other downstream 4719229 32593627 ~ 32596407 (-) True G5566
TU7893 other upstream 49836 37367985 ~ 37368822 (-) True G6441
TU8320 other upstream 2523786 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 5058577 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 7202765 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 8988777 46306926 ~ 46307319 (-) True G7868

Expression Profile