RNA id: TU7897


Basic Information

Item Value
RNA id TU7897
length 1555
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G6445
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37412689 ~ 37416547 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAAAAGTTGGAACTTTAATTGGTTGATGTACATGTTACAATAATTGTACAATTATCATATACAGGTGTTAAGTATTAAAACAGCCACCAGAATATATGGTGCAAACATCAGCAATTCTTGGTAAGAAACACTTCAATAGATTAGTAACAGGCTAGAAGGCAGATCTCCATCATTCTTCTGTGAATTCCATAGAAATCCAGTTTCAGAAGCAATTCGTTCGGGCCGTTGAGGCTGGCTTAATAACACCATGAATAACTTTCTCAGACTGTTACATTAAACCAGCACCACCAGGGTATTTCAAGTCTAGCACCAGGGTAGCTTGATATATTACTGGCCTTACAGATTAAACAGACACGGTGAATCCTCAGTCACTGTCCGGCAAAAtcttctttgtgttttgaataTGAAGTATGTTTTGGTGCCTAAGGTAGGGTCTATCAGGTGAgcactattttaaaaataaagtaactaAAAACACAAGTGTGCCATCTAATTCAAGTAGTATATGTTGAATGCAAACCCTCTGCAATGTTACATTAGATTACTAACCCAAGCAGTGATCATCTCAAATGCCCATTACATGATCATACACATTGCtgatgtaaaacataaaaactgcagtaataaaaaaatgcattacaaaaagaACAGACATGACATTAGCAAACAGCACTTCAAAAAACGTAGGCCATTGAAGCAGGTTTGGCTGACTGccatttttataaaattagtgcataaattatattacatatcaTTAGTGTTTAACGGTAACATACATCATTTGTAAATTCTGACGTTTCCCTATGAACAGTAATACTAACAAGAAGCTCCAAAACATAAGAGAACACCTTTTCAAAGCTACATTTACGCAAGTGcaagatgtattttaatgtgcacGGTGGGAAGCAACTGTTACAGACAAAACTGTCTGGCCTCAGCGCATGTCACATGTTCCAGGCTTTACTGTACATGCAGcattattctctctgcttctcaCGGCCCTTGCCAGCTTGTGATACATGAAGTAAATGCAATCCCTGGCCATGTGACTACAGGAGGTCAGGCAGGTGGCTGTAAACGGAGTCCAGCAGCTTCTGGCTGGCCTCCTGGCTTTTGACACCAGCAATCTCAAAGAGTTTATCCAGCTTGTCCTCAGCTGAGGGAGTCTCCTCGATTACGTGCAGCTCCTCAGGGTTTAAAATGTGCAACATGTCGTCGAAGATGGGCTGTAGGTCACATGGGTCCAGGCGGACTTGGCGCAGTACAGTGTCCTTTTTTTCCTTTGGTAATAAAAGAGCCTGTTCTGCTGAGGGCTGAGTTGTTGCTGGAGGTGGAATCACAGCGCAGAAGTGGTTCTGACTCGTCTGGGAAGAATCCCTTGGTCCTATCCACTGGGGAGTGCTCCACGATGACTCCTGGGGACTCTAAAGGCTTGTGGGTAGGGCTGAGGCATTGAGTTACATTCACAGAGGTCATCAGCTGGTTCAGatcaaactggaaaacaaacaaacaaaacaaagaacagaggggaaaacaagtgaatacaatagcTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7892 lncRNA downstream 30736 37349826 ~ 37381953 (-) False AMCG00004203
TU7888 lncRNA downstream 94540 37315636 ~ 37318149 (-) True G6437
TU7887 lncRNA downstream 94540 37315677 ~ 37318149 (-) False G6437
TU7821 lncRNA downstream 384445 37028028 ~ 37028244 (-) True G6384
TU7807 lncRNA downstream 491833 36912238 ~ 36920856 (-) True G6374
TU7919 lncRNA upstream 81651 37498198 ~ 37498446 (-) True G6462
TU7958 lncRNA upstream 150784 37567331 ~ 37569793 (-) True G6491
TU8060 lncRNA upstream 838462 38255009 ~ 38255371 (-) True G6574
TU8075 lncRNA upstream 1049866 38466413 ~ 38466664 (-) True G6588
TU8086 lncRNA upstream 1199672 38616219 ~ 38616465 (-) True G6599
AMCG00004203 mRNA downstream 62644 37324010 ~ 37350045 (-) True AMCG00004203
AMCG00004204 mRNA downstream 124354 37278386 ~ 37288335 (-) True AMCG00004204
AMCG00004196 mRNA downstream 359916 37050001 ~ 37052773 (-) True AMCG00004196
AMCG00004195 mRNA downstream 406738 36971391 ~ 37005951 (-) True AMCG00004195
AMCG00004194 mRNA downstream 451987 36921065 ~ 36960702 (-) True AMCG00004194
AMCG00004202 mRNA upstream 70410 37486957 ~ 37512998 (-) True AMCG00004202
AMCG00004201 mRNA upstream 108232 37524779 ~ 37528763 (-) True AMCG00004201
AMCG00004200 mRNA upstream 129828 37546375 ~ 37555523 (-) True AMCG00004200
AMCG00004207 mRNA upstream 191474 37608021 ~ 37632390 (-) True AMCG00004207
AMCG00004211 mRNA upstream 545730 37962277 ~ 37978111 (-) True AMCG00004211
TU7893 other downstream 43867 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 1998243 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 2448850 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 2520076 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 3277089 34132098 ~ 34135600 (-) True G5801
TU8320 other upstream 2425388 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 4960179 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 7104367 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 8890379 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 9051578 46468125 ~ 46468434 (-) True G7882

Expression Profile