RNA id: TU8060


Basic Information

Item Value
RNA id TU8060
length 363
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G6574
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38255009 ~ 38255371 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTGGAAATTGGTGACATTGAGAATGAGGAGAAGCGATACCAGCTATTTGTGGAGTTGTTGAGCTCTAGCAGCAAATGGGAGGAGATGCAGCACTTAATACTACTTCTCCAGGCCTGGCCTCCAGTGGCAAGTCAAGCTATGTAAGTGATTCTCATACCTTCAATAGATAATGctgataattgtttttttgtttagttttttacataCCCTAGCAATGTTATGATGCTCAATCATATACGTTACCTTGTATAAAGGCATCTgataaatcacaaaaataattatcataatacatagttcacaaaaatatattgggACTGCTGAAGGCATCCTTGAAATGCACAATCatcatgtttaatttac

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7958 lncRNA downstream 685216 37567331 ~ 37569793 (-) True G6491
TU7919 lncRNA downstream 756563 37498198 ~ 37498446 (-) True G6462
TU7897 lncRNA downstream 838462 37412689 ~ 37416547 (-) True G6445
TU7900 lncRNA downstream 838462 37412689 ~ 37416547 (-) False G6445
TU7892 lncRNA downstream 873056 37349826 ~ 37381953 (-) False AMCG00004203
TU8075 lncRNA upstream 211042 38466413 ~ 38466664 (-) True G6588
TU8086 lncRNA upstream 360848 38616219 ~ 38616465 (-) True G6599
TU8161 lncRNA upstream 671350 38926721 ~ 38927022 (-) True G6668
TU8276 lncRNA upstream 1339570 39594941 ~ 39596639 (-) True G6762
TU8289 lncRNA upstream 1513038 39768409 ~ 39768610 (-) True G6770
AMCG00004212 mRNA downstream 166505 38077481 ~ 38088504 (-) True AMCG00004212
AMCG00004211 mRNA downstream 276898 37962277 ~ 37978111 (-) True AMCG00004211
AMCG00004207 mRNA downstream 622619 37608021 ~ 37632390 (-) True AMCG00004207
AMCG00004200 mRNA downstream 699486 37546375 ~ 37555523 (-) True AMCG00004200
AMCG00004201 mRNA downstream 726246 37524779 ~ 37528763 (-) True AMCG00004201
AMCG00004213 mRNA upstream 78902 38334273 ~ 38479940 (-) True AMCG00004213
AMCG00004217 mRNA upstream 326383 38581754 ~ 38588893 (-) True AMCG00004217
AMCG00004219 mRNA upstream 490315 38745686 ~ 38754627 (-) True AMCG00004219
AMCG00004220 mRNA upstream 502393 38757764 ~ 38784839 (-) True AMCG00004220
AMCG00004221 mRNA upstream 578537 38833908 ~ 38840031 (-) True AMCG00004221
TU7893 other downstream 886187 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 2840563 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 3291170 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 3362396 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 4119409 34132098 ~ 34135600 (-) True G5801
TU8320 other upstream 1586564 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 4121355 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 6265543 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 8051555 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 8212754 46468125 ~ 46468434 (-) True G7882

Expression Profile