RNA id: TU8071



Basic Information


Item Value
RNA id TU8071
length 326
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G6585
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38416598 ~ 38418776 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTACAATTTGCACAAGCTCACCAAAATTGGACagttgaagactggaaaaattgaaaaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggtgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8059 lncRNA upstream 161115 38255229 ~ 38255483 (+) True G6573
TU7999 lncRNA upstream 568878 37844509 ~ 37847720 (+) True AMCG00004210
TU7929 lncRNA upstream 900100 37514882 ~ 37516498 (+) True G6471
TU7873 lncRNA upstream 1072153 37344061 ~ 37344445 (+) True G6428
TU7870 lncRNA upstream 1075584 37337526 ~ 37341014 (+) True G6427
TU8073 lncRNA downstream 47620 38466396 ~ 38466643 (+) True G6586
TU8085 lncRNA downstream 197468 38616244 ~ 38616464 (+) True G6598
TU8105 lncRNA downstream 331138 38749914 ~ 38756252 (+) True G6617
TU8115 lncRNA downstream 357177 38775953 ~ 38777500 (+) True G6627
TU8146 lncRNA downstream 439342 38858118 ~ 38859005 (+) True G6653
AMCG00004214 mRNA upstream 189787 38225556 ~ 38226811 (+) True AMCG00004214
AMCG00004216 mRNA upstream 196503 38213382 ~ 38220095 (+) True AMCG00004216
AMCG00004215 mRNA upstream 230461 38088863 ~ 38186137 (+) True AMCG00004215
AMCG00004210 mRNA upstream 569827 37832623 ~ 37846771 (+) False AMCG00004210
AMCG00004208 mRNA upstream 809376 37570803 ~ 37607222 (+) True AMCG00004208
AMCG00004218 mRNA downstream 312732 38731508 ~ 38743566 (+) True AMCG00004218
AMCG00004222 mRNA downstream 407045 38825821 ~ 38833968 (+) True AMCG00004222
AMCG00004223 mRNA downstream 421240 38840016 ~ 38850011 (+) True AMCG00004223
AMCG00004224 mRNA downstream 432013 38850789 ~ 38855317 (+) True AMCG00004224
AMCG00004225 mRNA downstream 535361 38954137 ~ 38963635 (+) True AMCG00004225
TU7800 other upstream 1416440 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 1524852 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 1642075 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 2141668 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 2650418 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 3040800 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 3793734 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 4270003 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 7543234 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 9728112 48146888 ~ 48147156 (+) True G7999

Expression Profile