RNA id: TU8105


Basic Information

Item Value
RNA id TU8105
length 2629
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G6617
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38749914 ~ 38756252 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCAGAACAAAAGGTAGATGGTATAGCTCCGTAAAAAGGAGTCACCTGAGTAAAGACAGAAAATGCAAACCTACATTCTCTAACTGAAAGATTCCAGCAATTGTTCAGGTTGTATGTGAATGACCTCCCCAATTTGAGTACAGTTAACTAATATTTCACGAgagattttcattaaaaattgtgaaaaaagaaaagaaaaaaacacgtTAGTTCCACAGTTTGGGTAAGTTAATACTAacctttgcatttagttcatcaACAATAAAATGGCACAGTGCAGCCTTAAAGAAATACTCTTTCGCACTGTATTTCAGTAAGGGGTTATCCATAGTGTTAGTGCCAACCTGCAGagacggaaaaaaaaaaaaaatgtaaatcggTTTTGCTTTCAAATAAGCAAAGAAATTACACAACTACTTTTCAAAGCACACAAACCTGCTCATAAATTTCAGTTGCCTTCTGATATTGTTCTAGTTGTGCGCTATACGAAGCTACCTTCAGTAGACACTTGTTGGCAGagctaaataataattaaaaaaacattgttaaaagcAGATTTCACTTAAATTCtataatttaaaagcattttcaaagtTAGATGTGTGATAAGTGTGTAgttttctttcaataaaaacttgCACTTACCTTAGcagatatacattttgaaggaaGCTAAAAGTGTCATTTCTGCTCTACAAATGATGCAACATTAACACATAGACGAGGGTTAGACTATGCAACAGATTAATGTTCCCTTAGTCTTACCTGTTAGACTCTTCCCCTTTGTAGTAATCTGCTGCCTGTTCATAGTGTGCAATAGCCTaaagtgagagaggagagaagagaagaattACAAGCTGATAAATGTTGCTTCCACAAGACTGATTGTGGATACTAATTATTCccaaaataaaccttttcattggatatagttttacattgtatatttagtattaaatattgaaatgattaaccttatttaatttctattcCACATTGAAAGTAACTCTAATAAAAGTACCTTGTACTTTCACTCACGACTGGCTTCCCCGTGTTTAAAACGATCCCCCAGGGTGTTAAAATCCAGCACAATCTATGCATTGGGCAGAGGTTTTGACATATTGctgcaaatacaatttatttgaaacacTGGAGAAACACGGGGGAAAAATTATATTTCGGGAGCCTCCATTGAGATAAGAAGAGTTCACAGTTGTGAATACATACCTTTTCAATATCCACCAGCTCAGACTCATAAACCTCGGCAATTGTGATGTGGTGTTTAGCAGCAATAGTGAATCTGCCCTGTAAGACAGATGGATTGTTCCATGAATGGACTTATAATCAAAATCTCAACCCAAGAACCACAGAACGCATCCAATAATATACAGACAGATGTTGCTATACTTTTGGTCTGAGTTTCTTACcatatctgtgtatatatcGATGGCTGCATTTAAGCAGTTGATAGCCTCTATTGCGTGCATTTggaaaaaggaaggaaaagtcaATGCAGAGATCAAACCACAGGTAAGGTATAAACCTgctaatttgaaaacaacaaacctgTACTCATTAGcaacttaatgttttattagatGCTTCTTTCTTCCACTAAGAAATATAACCGCTATCAATTACatgtctgtagtttgctattaggaggctattcagtttttatttaatccaggaAAAACTTTACTGTTAGCCGACTGATtctgtcaatattttttttaaactgctatTACTAGTTAAAAATATGCAGGAAAATTAATTCTGGTGATTTAGAGATTTCCCCTTACAACttgtggggggtggggcagggggaaaaaaaaaattactacTTTCACTTTCCCACCTTGTGGATCTGCCTTCTTGTAAGCATTGCCGGCATCTACGAAGCTGGTGGCAGAGTCGTGCTTGCTCTGGAGCTGCATGTGCAGCTTGGCAGCCTGACAGAAGGCACTTCCTGCAGCTGGAGAGAAAAATACTCGAATGGGAAAGCTACAGAGTCTCCTTTTCCATAGAGATTTAATTCCAAACAAGCCCTCTATTATAACATTGAACCAGTTATGGCTCACTCTGGTCAAGATTAAATATCAACATGCTTGGCAGTCATTTTTACAAggtaaataaaaagcaaagcagaTTTTCTGATAGGTGTGTTTCACAAGACAGCAGTGCTTGAAGGGTCACCAAGGAGCATGGTGgagaacacaaaaatacattttacattttagacaaTTTACCATTCCAGTTCTTGGCCATCTTGAACATGTTAGCTGCCCTTGCATACATCTCACATGCTTCTTCCACTTTAGAGTTGCccCCAAACATGCCGCCCAGGAACGAGTGGGAGGATTTCACTTTCTTATCCGCTTCAGCCATGAGTTGAATGGCTTCTTTTTCCTTCCCGGAGttgtccatttttattttggtatttttctaAAAGCTACACTTTTCAAATCCGATCTCTTCCACCTCCCGTTGTAGCAGATTTATGATCAAGGACTGTATTTACTACCAGCAGCGCGTCTACATCCTCCGCCGAAAGGCTTCACGGGATATCTAGTTTATTTCTCTTAGGCGAAGCACAAAAAAGGTACAAGGAAACTACACATCCCAAAG

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8085 lncRNA upstream 133450 38616244 ~ 38616464 (+) True G6598
TU8073 lncRNA upstream 283271 38466396 ~ 38466643 (+) True G6586
TU8071 lncRNA upstream 331138 38416598 ~ 38418776 (+) True G6585
TU8059 lncRNA upstream 494431 38255229 ~ 38255483 (+) True G6573
TU7999 lncRNA upstream 902194 37844509 ~ 37847720 (+) True AMCG00004210
TU8115 lncRNA downstream 19701 38775953 ~ 38777500 (+) True G6627
TU8146 lncRNA downstream 101866 38858118 ~ 38859005 (+) True G6653
TU8160 lncRNA downstream 170486 38926738 ~ 38927030 (+) True G6667
TU8170 lncRNA downstream 210426 38966678 ~ 38966890 (+) True G6676
TU8179 lncRNA downstream 366295 39122547 ~ 39148294 (+) True G6684
AMCG00004218 mRNA upstream 6348 38731508 ~ 38743566 (+) True AMCG00004218
AMCG00004214 mRNA upstream 523103 38225556 ~ 38226811 (+) True AMCG00004214
AMCG00004216 mRNA upstream 529819 38213382 ~ 38220095 (+) True AMCG00004216
AMCG00004215 mRNA upstream 563777 38088863 ~ 38186137 (+) True AMCG00004215
AMCG00004210 mRNA upstream 903143 37832623 ~ 37846771 (+) False AMCG00004210
AMCG00004222 mRNA downstream 69569 38825821 ~ 38833968 (+) True AMCG00004222
AMCG00004223 mRNA downstream 83764 38840016 ~ 38850011 (+) True AMCG00004223
AMCG00004224 mRNA downstream 94537 38850789 ~ 38855317 (+) True AMCG00004224
AMCG00004225 mRNA downstream 197885 38954137 ~ 38963635 (+) True AMCG00004225
AMCG00004228 mRNA downstream 493210 39249462 ~ 39293233 (+) True AMCG00004228
TU7800 other upstream 1749756 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 1858168 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 1975391 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 2474984 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 2983734 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 2703324 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 3456258 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 3932527 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 7205758 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 9390636 48146888 ~ 48147156 (+) True G7999

Expression Profile