RNA id: TU8170


Basic Information

Item Value
RNA id TU8170
length 213
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G6676
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38966678 ~ 38966890 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAGGATTCCACTTTTCAACCTTTGGCCTACTTTTATATGCACAATGTGGTCAGCACACTTCTTGTAAAATTTCTCagatgactttggttttactaaCCTCATTAAGATTCTGCAGTCTTTACTGCTGCAACACCCCCTCatcctccctgcctctctcaaGTGAACCAAGACTACATGTGCAGTGACCACTACTTGCTTAAACTTCAGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8160 lncRNA upstream 39648 38926738 ~ 38927030 (+) True G6667
TU8146 lncRNA upstream 107673 38858118 ~ 38859005 (+) True G6653
TU8115 lncRNA upstream 189178 38775953 ~ 38777500 (+) True G6627
TU8105 lncRNA upstream 210426 38749914 ~ 38756252 (+) True G6617
TU8085 lncRNA upstream 350214 38616244 ~ 38616464 (+) True G6598
TU8179 lncRNA downstream 155657 39122547 ~ 39148294 (+) True G6684
TU8180 lncRNA downstream 155788 39122678 ~ 39148294 (+) False G6684
TU8288 lncRNA downstream 801494 39768384 ~ 39768607 (+) True G6769
TU8290 lncRNA downstream 803575 39770465 ~ 39770698 (+) True G6771
TU8339 lncRNA downstream 977610 39944500 ~ 39945055 (+) True G6807
AMCG00004225 mRNA upstream 3043 38954137 ~ 38963635 (+) True AMCG00004225
AMCG00004224 mRNA upstream 111361 38850789 ~ 38855317 (+) True AMCG00004224
AMCG00004223 mRNA upstream 116667 38840016 ~ 38850011 (+) True AMCG00004223
AMCG00004222 mRNA upstream 132710 38825821 ~ 38833968 (+) True AMCG00004222
AMCG00004218 mRNA upstream 223112 38731508 ~ 38743566 (+) True AMCG00004218
AMCG00004228 mRNA downstream 282572 39249462 ~ 39293233 (+) True AMCG00004228
AMCG00004229 mRNA downstream 335819 39302709 ~ 39312703 (+) True AMCG00004229
AMCG00004230 mRNA downstream 430613 39397503 ~ 39436248 (+) True AMCG00004230
AMCG00004233 mRNA downstream 474236 39441126 ~ 39442709 (+) True AMCG00004233
AMCG00004231 mRNA downstream 478309 39445199 ~ 39453488 (+) True AMCG00004231
TU7800 other upstream 1966520 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 2074932 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 2192155 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 2691748 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 3200498 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 2492686 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 3245620 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 3721889 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 6995120 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 9179998 48146888 ~ 48147156 (+) True G7999

Expression Profile