RNA id: TU8180


Basic Information

Item Value
RNA id TU8180
length 2593
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G6684
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39122547 ~ 39148294 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGGACATGGCATTCaacatttacatgtataaatatgtataaaaacattttgttaaacattttttaattcagtaaaaTTCAAACAGGCTCTTAAAATGCAATCAACAAAGAAATGAACAAGACTGATAAAGAGTGGGGGaagcacaaaatacaaatatagtggaaagaatgctttaaaaataaaaaatatttatttgtaaaatgcagataagaaaataactgtcacatcagttttgtatttttgacatTCATGTACAAATACTGATTTACTTGAAGATGCAAGTATCTTACTAGCAAGAAACACTGCTGGGATGAGAGGGTTTTAGTAGGTTAGCATAAAAATCTAACTGCAAGTgtatcatttttatgtttactgcaacagaaacatttaaatttaagagAAAAGCTTCATTAAACACCCCAGCTAAAGCTGATCGGAGTGGTGCTTTTCCATTTCTAGTTATAAATAAGATGACCTTCAACTaaatctgattaaaaataagCCCAAGGGATAGAAATCACATGAATGTATATTCAAATTCAAGATTAGCCTTCTTGACATATATTtagtaaaaatatgtaaaattacacctcataaaaaaaactttcctcTGTACCCTTGGAAACCTGATGAAAGACACTATTTTGGCTTATTTGTTTTGACTTAATGTAGATCTTGTTCACTGAATATTCAGGCAATTCTGTAAATGTtgattttatactgtattgttaATAACAGACACTAGAAAATACGGGGGCTAACAATGCTAATCAAGATGGCTGATTTACTGTCaaccattgtttaaaaaataattgattaacaaattcatatgcatttttcatacaatctttcaaaataaaatatgtaacactattggcatttaaaaaaataaatacaattcatgCTCTTGAAATTACAGATGCTTTTAACACCCACAGTCAATTACCCTCTAACCAAGGAAACCCTGTTTgaataaagaaagcaaagattaaacaatattaaattaatacaagcTGGCATTTTGTAACTGGGCTTTGAGTGTCAATCAatagtcatatatatattgacactCTTTTACTTTAatgcagatatttgttttttaacagaagtatgtaacattaatttaaaaatgttgagttatattgttttcttattaagcAGACAAAAAGTGGTCTATTGACATCAAGGATCTCTGGCACAAAGTGACATTCTAAGAAgactggaaagaaaatacaaaggaaacatggcaaatacatatttatctgAAGGGAATTTAAATGGATGCATTACACTTCCCAATTTAAACTGAAGCCACTTTTCTTCGATATATCTCAGAATTCTTgggaacattttgaaatattataaaataagcaTAACATGAACAATGATGTGCccttttctgtgatttaaaggGGAAAAGAGGCAATAAAGTGCAAATTTAGATCATACCTATAGCCATGATAGACATCTTAAGACTTAACTACAATTGGTGAAAGTACACTGTTAAAGGTAAATGATTACTTTGCATCTAATGTACACGTGTACCCCAATATAACGTGGTCCTCGGGGGACTGCGTTACACGAAATTGCTTTGGCCTCGAGCATTCCCAGTATTTATTGTCttgcaaaaaatgtttgttaGCGCTAACACAtgtatgcagtaaataaatctgtgctACAATGGTTCAATTGTATgtcctttctttaattacaacagTTATTTTATAAGTTTACTTAAaacatacagtgtattaacaacacCGGTAATAAACACTAATAAATGTCACCATGTGGGCTCGGTTTCATCATAAATTAATAGTTTGGTCTGCGGAAAATTAgaaattcatataaaatatcagaaaacgcttttaattacacatccttacaaattgttgtaaaaaGGATTTGGGCATTTTAACAAATAGGAGCATGGACCGCTTTGTCTTTTAGCCAACTATGTTATATGTAGATtgttaagtaaaacaaaacaaaaatttgaACTTTTGTAGAGTTTTTACTTATAGAAAAGGTTCAAATGAAGCTAAAAAGTGTAAATTAATCAATGTGTGTAAACTGTCAATGTTATAACTTTAATCAAGACTTGCAGACAGGACTGTTTTCATGCAATGAAGATCagagtgaaagtttaaaaatgctgtaaatgagCTCGGCTTTGTGTTCTGACTTTCCAAACAATTTTTGCTTTACCACGTTAAACCAGAATTTGCATTATATCTGATTGGGTTATATCAGGGTAGAGGTGTATATCAAATGGCATACTTGACAACAGGCCACTTTCACAAGCAACAGCGACATGCCAATTGGGCTGAATTGGTCCGccaataatcataaaataacagGTGGTAATGTTCCTCAAAAATGACTATATGCAATGATAGTAGACAGTATTCAAACAGTACAGCTACATTTTGCATGAGAAAgactaagggccggattaagtcaaaactttgacccacccgctaatagcaaactacaaacctgtacatcaaaGCGGTTACagttatgattagaagaaagtgtcatcttactgaaaatgaaaccacaactgagtacagttctTCAGTTTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8170 lncRNA upstream 155788 38966678 ~ 38966890 (+) True G6676
TU8160 lncRNA upstream 195648 38926738 ~ 38927030 (+) True G6667
TU8146 lncRNA upstream 263673 38858118 ~ 38859005 (+) True G6653
TU8115 lncRNA upstream 345178 38775953 ~ 38777500 (+) True G6627
TU8105 lncRNA upstream 366426 38749914 ~ 38756252 (+) True G6617
TU8288 lncRNA downstream 620090 39768384 ~ 39768607 (+) True G6769
TU8290 lncRNA downstream 622171 39770465 ~ 39770698 (+) True G6771
TU8339 lncRNA downstream 796206 39944500 ~ 39945055 (+) True G6807
TU8358 lncRNA downstream 866973 40015267 ~ 40034323 (+) False G6819
TU8359 lncRNA downstream 866973 40015267 ~ 40034323 (+) False G6819
AMCG00004225 mRNA upstream 159043 38954137 ~ 38963635 (+) True AMCG00004225
AMCG00004224 mRNA upstream 267361 38850789 ~ 38855317 (+) True AMCG00004224
AMCG00004223 mRNA upstream 272667 38840016 ~ 38850011 (+) True AMCG00004223
AMCG00004222 mRNA upstream 288710 38825821 ~ 38833968 (+) True AMCG00004222
AMCG00004218 mRNA upstream 379112 38731508 ~ 38743566 (+) True AMCG00004218
AMCG00004228 mRNA downstream 101168 39249462 ~ 39293233 (+) True AMCG00004228
AMCG00004229 mRNA downstream 154415 39302709 ~ 39312703 (+) True AMCG00004229
AMCG00004230 mRNA downstream 249209 39397503 ~ 39436248 (+) True AMCG00004230
AMCG00004233 mRNA downstream 292832 39441126 ~ 39442709 (+) True AMCG00004233
AMCG00004231 mRNA downstream 296905 39445199 ~ 39453488 (+) True AMCG00004231
TU7800 other upstream 2122520 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 2230932 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 2348155 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 2847748 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 3356498 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 2311282 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 3064216 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 3540485 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 6813716 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 8998594 48146888 ~ 48147156 (+) True G7999

Expression Profile