RNA id: TU8289


Basic Information

Item Value
RNA id TU8289
length 202
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G6770
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39768409 ~ 39768610 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCTGTGCactgacgctccccatccaacctgatggagcttgagaggtcctgcaaagaagaatgggagaaactgcccaaaaataggtgtgccaagcttgtagcatcatactcaaaaagacttgaggctgtaattggtgccaaaggtgcttcaacaaagtattgagcaaaggctgtgaatacttatgtacatgtgcttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8276 lncRNA downstream 171770 39594941 ~ 39596639 (-) True G6762
TU8161 lncRNA downstream 841387 38926721 ~ 38927022 (-) True G6668
TU8086 lncRNA downstream 1151944 38616219 ~ 38616465 (-) True G6599
TU8075 lncRNA downstream 1301745 38466413 ~ 38466664 (-) True G6588
TU8060 lncRNA downstream 1513038 38255009 ~ 38255371 (-) True G6574
TU8321 lncRNA upstream 70558 39839168 ~ 39841082 (-) True G6793
TU8357 lncRNA upstream 241801 40010411 ~ 40014259 (-) True G6818
TU8363 lncRNA upstream 246624 40015234 ~ 40034323 (-) False G6822
TU8364 lncRNA upstream 251569 40020179 ~ 40034323 (-) True G6822
TU8389 lncRNA upstream 309407 40078017 ~ 40078283 (-) True G6838
AMCG00004239 mRNA downstream 105812 39657951 ~ 39662597 (-) True AMCG00004239
AMCG00004237 mRNA downstream 123231 39601527 ~ 39645178 (-) True AMCG00004237
AMCG00004238 mRNA downstream 190440 39564916 ~ 39577969 (-) True AMCG00004238
AMCG00004234 mRNA downstream 289329 39457144 ~ 39479080 (-) True AMCG00004234
AMCG00004232 mRNA downstream 623149 39125700 ~ 39145260 (-) True AMCG00004232
AMCG00004241 mRNA upstream 89878 39858488 ~ 39867709 (-) True AMCG00004241
AMCG00004244 mRNA upstream 104451 39873061 ~ 39881929 (-) True AMCG00004244
AMCG00004243 mRNA upstream 137659 39906269 ~ 39911511 (-) True AMCG00004243
AMCG00004242 mRNA upstream 165707 39934317 ~ 39942767 (-) True AMCG00004242
AMCG00004247 mRNA upstream 182082 39950692 ~ 39951933 (-) True AMCG00004247
TU7893 other downstream 2399587 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 4353963 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 4804570 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 4875796 34891901 ~ 34892613 (-) True G5871
TU7138 other downstream 5632809 34132098 ~ 34135600 (-) True G5801
TU8320 other upstream 73325 39841935 ~ 39849123 (-) True G6792
TU8946 other upstream 2608116 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 4752304 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 6538316 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 6699515 46468125 ~ 46468434 (-) True G7882

Expression Profile