RNA id: TU8357


Basic Information

Item Value
RNA id TU8357
length 3849
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G6818
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40010411 ~ 40014259 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCggatacattgtttatttataggtGCGCACTGCATACTGCGGTCAACAccaaaatacagaatacaaaatagaaaatgaatggaCCATTCAGGGATTCCTTACAGAAGAACACCAACAGCCTGGGATGCTCTGATGGCAATAGGTCACAGCAGAGAAGCTGGGGCTGCTGGCTCAGGTAGTGCCCTCGATGCCAGACCAGACAGTCTTGGTGCAGGACGAGCCATCGCGGGCAATGAACAGATGGTAGGAGGAAGTCAGGGACGTGGGGGTGGCGGGGGTAGCTAAGGTTTATGCTTGTAACTTGTACTGATTGCATTAATtgcacttttttaaaaacaaatattgtgaaATCTTCGTCACCCTGGGAGTCtgctagtaaataaataataataaagtcgaCAATGACCATCTTTGCCATACGGTTTAATCAGCACTGGCAAACTCTGGCTATTTAAAATCTTCTTAAGGGCTCCCCTGCTCTGTCTGCCTACACCTACCAACCCAGGATATGCACATCCATACCGACCCTGCCGGAGACCACAACCCTGGCACGCATGTCAGGGATTGGTGGCCCACTGGGGGAGGGTCTCATTTCCACCGAGCTGCAGTTTAATCCCCCCAAACTGAACGGATATCTTTTTATGTGGacatttttgattgtttaaaaCGTGAAGACAGCCGAGTTAATTGTGTATTCAAGCAACTGCTGTTTTCTCTCATTTAACGGGACATTTAAGTGGAACGCATTTGCTCTATTACAAATGTACAGTAGCATATAAGACTTGCGCCAATGTCTTCGTCACAACCCTGGGCGATTAACACAGCGGAAACGACCAGGGGCGACGTCTCTGTAACGAACGGTGTACAAGtgtaatgcattacaaaatctTTAGCCAAGAACGGATCTGTGAGTTCTAAGGTCAAATAAAAACCAACCAGTCCTAAAATAATAACACCTTCATTGATCGTCGGTTTGCATGATGTCCAAGGACAGATCTTTtgtcaatcaaaaacaaacaaacaaacaaacaaacgatcATGTAGGCTACAATAATTGAAATGATCAATTGTATAATTGTAGCATCgcatgtttgcattttaaagcaaagaaaatagtacaataaataaaatattgatgtaaaaGTAGGATGATGTTTCAGTCAGCAATCAAATAACAAGAAATTGCAACAGAAAATGCACCTTCATCGATATAATGTTGTTTACCCTTTATGGTTTATGGATTTCTGCaattataatttcctttcaaatgaacACTTACAGAAACGTTTCACAAATGCTCGAGCATCTCTGCAGAAAACAATTGCTTGTGTATTTGGTATAAGCAAGAAACCTCGCACCACGTTTTTCGTAGGATTTTGATCAAATGGTCTTCGTTTTAAATACAGCAACCTTTAATGTACaccaataaaaacacacaaatattgaaatcaaaTACCTGTAGTTTCAAAACATGTCAAactaaatgtatgtgtttatgtacagTAGTCTCatggtgcattatttattaaagcactgtttatgAAAAAAGTCTATGACAAAGTGACgaattattttgtcaaattagTTTCCTTGGGGCTATATTTCTAAATGCACGATTTACAAATTTCATTGCAATAGTAATGAAAACGACACAGtgagtatttaaaatgaccAACAAACAACTTGTACTTCAACACATCATAGACCAAGTGCAGGAGCTAATAAACAAAGTTGCACACAACAaatgctgtattattattattattattattaccttgaagacagaaaagaaagaaagagaagcaaAATGGTATTTGAATGCGCGTTGTTGAAATAAATCTcgaatattttaaaatccttaattAACTCATCAAAAGGACAATTACACGTCAGACTCGTCTCCTAAGTTACACAGAGCTTCCTGGGCTGCAGCATCACGACCTCCTCCCTCCTTGGAGGTATGCGTCTCGTTTCCCACCCAGCAGTAGTTGTCTGTGGCCGTGCTTTCCTTTTTGGTTTCTCTTTGGATACAGTTACGCCGACAGATCACGACAGCCGAAACAACAGCAATTAAAAGTAACAAGGCAACCAATGCCGACATTACAGAAGCAAGTATCCATGTCTGACTTGCATTGTGTATCTGACGCACATTGTTGCCATTTTCACCCGTTTTCTCGGTGGGGGCTGTGGAGTGGGAAGACTTTTGAACTGGTGCGCTAGTGTAGCTGAGCAAGGCCTCGTTTATAAAACCTGTTGTCTTTTCTTCACTGTCTCCCTTCATATATTCTGTTGGGGTTCGTGCTGCTAAAGTCACCATGGTCTCAGATGGCACCCTGTAGATGCCATCTGTATGCCGGGTAGTGTGGTCTCTCTCATCTATAGGTTTGGCAGTAGCTGAGGTTCTTACTGGGTTAGGGATGCATGCTATTCCGTCGGATGCCACCTTGTAATGTTGTTTGCAAGAGCACTCAAAGCTGCCGACAGTGTTTGCGCACCTCTGCTCACAGGGGTTGTTGAGGCACTCGTCAATATCCAAGCAGCTGCGCCCATCCTCTGATATCTCGAACCCCCCCAGGCAGTAACAAGAGAAAGATCCCGGCGCATTGAGGCAGCCTTGATCACACCTCGATGCCATGCACTCGTCTATATCGTGGCAGGTCCCATTAACCATGACGTACCCGTCTCTGCACGAACACGTGAAACTGCCCTGGCCGTTTGCGCACAGTTGTTCACAGGGCCTGGATGCGCATTCGTCCACATCGATGCAACCGAGGCCGTTTGGGGCGAGTTGAAACCCGTCTGGGCACAAGCAGTGAAATCGTCCCCTATCCGATTTACACCTGTATTCACACCCAGCATGCTGGCAATAGTCGATTTGGACACATGTCACCTGGTCGGCAACGAGTGCATAACCGTCTTCACATTCACAGCGCGCATCCCCGTTTCCACCGACTACGCAGCGATGGTCGCAGCCCCCATTAGCAAACCTGCAGCCTTGTTTCACAGAGTCACACAACGGACCTGGGGGACTCCAGCCGAAGAAGCCTTCATTAGGCAAGCAATAAGCACTGATTTCATTGTCGGTATTGGCACACTTCACCGTTGCAATAGTCCCGTGAGGTACCATAGGTAAAAAAGCATTGCTGTCGCTTAGGCGAAACGTTGCAAAGGTCAGTGTGTAGTGCACTTCACCCGCCCCTGCCACAGGTATAGTTTTACACATGCCCTTAAAATTAAACTTGCACATATAGCCAGCTGCATCTTTGCAGGAGCTGTCCATCCAACCAAAACTATCACTATTTGGAGGAGACAACACGTAATGTATGGCTACACACCTCTCTTCTGTGCAGGTGCCTGGCGGTTCCACCTCCCAGTTTGAATACGGTGTGTCCGAGCTCCCAGACACCCAGGTAAAGCCTTTCAGAGTTGAATCCGCAGACGTGCACTCGCCCTTTCTCAGCGTCAGTCCAATCCAAAACTTCAAGTCATGACTTGTCTGGCCTTCCCGGATCCGGGACAGCACAGAATTTACCTCCGAAGCTTCTTCATGGCTCTTCACCGTCACCAAGTTCCCCCCGTTGTGTGTGCAATTGTGTTGAGCCTCAGTGAACGTGCTTTTGCGCAGATGTAAAGTGTAACATGCGCTGCCTGTGCACACCGTCTGGTCTGGCTGGTCGGCTGTGCTAACTATACAAAGAGCAGTTTGCAGAAGAAGTAACAAGAACACCATCATCCCCTTCTAAGTGAGTTAACAAATAGGACTTATGTGTAAAATATGTCCTGCTGCATACCGTATTGCCAACCAAGATGTATAAGCAATCAGCATAGCAGGCTGTTGTGTCTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8321 lncRNA downstream 169329 39839168 ~ 39841082 (-) True G6793
TU8289 lncRNA downstream 241801 39768409 ~ 39768610 (-) True G6770
TU8276 lncRNA downstream 413772 39594941 ~ 39596639 (-) True G6762
TU8161 lncRNA downstream 1083389 38926721 ~ 38927022 (-) True G6668
TU8086 lncRNA downstream 1393946 38616219 ~ 38616465 (-) True G6599
TU8363 lncRNA upstream 975 40015234 ~ 40034323 (-) False G6822
TU8364 lncRNA upstream 5920 40020179 ~ 40034323 (-) True G6822
TU8389 lncRNA upstream 63758 40078017 ~ 40078283 (-) True G6838
TU8425 lncRNA upstream 112289 40126548 ~ 40126792 (-) True G6872
TU8499 lncRNA upstream 584695 40598954 ~ 40602815 (-) True G6939
AMCG00004245 mRNA downstream 42676 39952121 ~ 39967735 (-) True AMCG00004245
AMCG00004247 mRNA downstream 58478 39950692 ~ 39951933 (-) True AMCG00004247
AMCG00004242 mRNA downstream 67644 39934317 ~ 39942767 (-) True AMCG00004242
AMCG00004243 mRNA downstream 98900 39906269 ~ 39911511 (-) True AMCG00004243
AMCG00004244 mRNA downstream 128482 39873061 ~ 39881929 (-) True AMCG00004244
AMCG00004252 mRNA upstream 66339 40080598 ~ 40100982 (-) True AMCG00004252
AMCG00004253 mRNA upstream 88480 40102739 ~ 40164334 (-) True AMCG00004253
AMCG00004260 mRNA upstream 154378 40168637 ~ 40173475 (-) True AMCG00004260
AMCG00004258 mRNA upstream 160313 40174572 ~ 40184290 (-) True AMCG00004258
AMCG00004259 mRNA upstream 183243 40197502 ~ 40218464 (-) True AMCG00004259
TU8320 other downstream 161288 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 2641589 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 4595965 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 5046572 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 5117798 34891901 ~ 34892613 (-) True G5871
TU8946 other upstream 2362467 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 4506655 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 6292667 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 6453866 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 6870376 46884635 ~ 46887337 (-) False AMCG00004398

Expression Profile