RNA id: TU8425



Basic Information


Item Value
RNA id TU8425
length 245
lncRNA type intronic
GC content 0.35
exon number 1
gene id G6872
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40126548 ~ 40126792 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggacctgaaccttttcaccctggaacagaggagactacgtggggacttgattcaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaaaacggaaaacaggagacgcttcttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8389 lncRNA downstream 48265 40078017 ~ 40078283 (-) True G6838
TU8363 lncRNA downstream 92225 40015234 ~ 40034323 (-) False G6822
TU8364 lncRNA downstream 92225 40020179 ~ 40034323 (-) True G6822
TU8357 lncRNA downstream 112289 40010411 ~ 40014259 (-) True G6818
TU8321 lncRNA downstream 285466 39839168 ~ 39841082 (-) True G6793
TU8499 lncRNA upstream 472162 40598954 ~ 40602815 (-) True G6939
TU8539 lncRNA upstream 548379 40675171 ~ 40696315 (-) True G6974
TU8593 lncRNA upstream 755016 40881808 ~ 40883167 (-) True G7023
TU8607 lncRNA upstream 789657 40916449 ~ 40921474 (-) True G7035
TU8690 lncRNA upstream 1167384 41294176 ~ 41364065 (-) False G7104
AMCG00004252 mRNA downstream 25566 40080598 ~ 40100982 (-) True AMCG00004252
AMCG00004245 mRNA downstream 158813 39952121 ~ 39967735 (-) True AMCG00004245
AMCG00004247 mRNA downstream 174615 39950692 ~ 39951933 (-) True AMCG00004247
AMCG00004242 mRNA downstream 183781 39934317 ~ 39942767 (-) True AMCG00004242
AMCG00004243 mRNA downstream 215037 39906269 ~ 39911511 (-) True AMCG00004243
AMCG00004260 mRNA upstream 41845 40168637 ~ 40173475 (-) True AMCG00004260
AMCG00004258 mRNA upstream 47780 40174572 ~ 40184290 (-) True AMCG00004258
AMCG00004259 mRNA upstream 70710 40197502 ~ 40218464 (-) True AMCG00004259
AMCG00004261 mRNA upstream 305067 40431859 ~ 40434843 (-) True AMCG00004261
AMCG00004263 mRNA upstream 315109 40441901 ~ 40453529 (-) True AMCG00004263
TU8320 other downstream 277425 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 2757726 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 4712102 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 5162709 34960960 ~ 34963839 (-) False AMCG00004132
TU7224 other downstream 5233935 34891901 ~ 34892613 (-) True G5871
TU8946 other upstream 2249934 42376726 ~ 42379406 (-) True AMCG00004313
TU9361 other upstream 4394122 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 6180134 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 6341333 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 6757843 46884635 ~ 46887337 (-) False AMCG00004398

Expression Profile