RNA id: TU851



Basic Information


Item Value
RNA id TU851
length 302
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G708
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4282149 ~ 4326850 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTCACCTTTATAGAAACATGTCTCCTGGACCAAGACCCGGACATCATTCCCTACATAGGCAAAAATATGAAAGGCAGTCTCCATCACCAAGCAACCATTACTGTTCAAGAACTAACAGTCCTAGCAATCGCTATCACTCATCTCACCCTGATCAGCACTGCAGTTCAAGATATTCTCGTAGTCCATCTGCATCCTACTCACACTCAAGGGACAGATACACAAGGAGAACACCCAGTCCACATCACCATGAGAGAAGGCCTGATTCCAGATACAGCGAACGTCATCTTTGCTCTGATTCTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU804 lncRNA downstream 306160 3975757 ~ 3975989 (-) True G667
TU799 lncRNA downstream 307439 3920996 ~ 3974710 (-) True G664
TU764 lncRNA downstream 386637 3893924 ~ 3895512 (-) False AMCG00003459
TU746 lncRNA downstream 416720 3862997 ~ 3865429 (-) True G624
TU706 lncRNA downstream 682560 3596921 ~ 3599589 (-) True G586
TU890 lncRNA upstream 156666 4483516 ~ 4485565 (-) True G743
TU891 lncRNA upstream 158757 4485607 ~ 4486026 (-) True G744
TU896 lncRNA upstream 193965 4520815 ~ 4521017 (-) True G748
TU915 lncRNA upstream 219048 4545898 ~ 4547298 (-) True G762
TU933 lncRNA upstream 452996 4779846 ~ 4783376 (-) True G777
AMCG00003460 mRNA downstream 46497 4218169 ~ 4235652 (-) True AMCG00003460
AMCG00003464 mRNA downstream 70247 4209747 ~ 4211902 (-) True AMCG00003464
AMCG00003461 mRNA downstream 161770 4092092 ~ 4120379 (-) True AMCG00003461
AMCG00003459 mRNA downstream 386625 3876232 ~ 3895524 (-) True AMCG00003459
AMCG00003451 mRNA downstream 426854 3853147 ~ 3855295 (-) True AMCG00003451
AMCG00003466 mRNA upstream 50042 4376892 ~ 4404642 (-) True AMCG00003466
AMCG00003470 mRNA upstream 194698 4521548 ~ 4522998 (-) True AMCG00003470
AMCG00003472 mRNA upstream 220763 4547613 ~ 4553234 (-) True AMCG00003472
AMCG00003471 mRNA upstream 235551 4562401 ~ 4565560 (-) True AMCG00003471
AMCG00003476 mRNA upstream 256292 4583142 ~ 4808989 (-) True AMCG00003476
TU643 other downstream 851877 3394657 ~ 3430272 (-) True G531
TU462 other downstream 1843328 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 1880254 2397642 ~ 2401895 (-) False AMCG00003423
TU920 other upstream 323921 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 1018989 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 6624326 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 6776476 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 7596958 11923808 ~ 11939783 (-) True AMCG00003623

Expression Profile