RNA id: TU8687



Basic Information


Item Value
RNA id TU8687
length 382
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G7102
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41523053 ~ 41529308 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTAAGAACCCAATATGGCAGCGGCAGGAGCTCCAGCACTGTAACTACAGCCACACTTGCACAGACACGGCGACTCGGGCTCCGCAGCGGCCGCGGGTTACACGCAGATCATCGGCAtgagggagagacagaagaagaagaaagggagGACCTGGGCAGAGGCTGCCAAAACGaatgGCCTTAACGCAAATTGGACCTGGGATGTTGAATGAAACTATGCAAGATCCACATAATCTTTGCACCCCTGCCCTTTTATCAGAAACAGTCCTGATGTTTCTGGTTTGTCCTGACGTGCTGTTGGAGCCGCTCATTATTGTCTGTTTGCTGATCAGATCCGAGTGACAGCACCCATACTGATGGAGAAGGGAGTTATAAACATAAAG

Function


GO:

id name namespace
GO:0050780 dopamine receptor binding molecular_function
GO:0031752 D5 dopamine receptor binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8666 lncRNA upstream 154575 41367145 ~ 41368478 (+) True G7084
TU8658 lncRNA upstream 158987 41295298 ~ 41364066 (+) True G7078
TU8623 lncRNA upstream 544734 40977999 ~ 40978319 (+) True G7048
TU8456 lncRNA upstream 1181845 40339067 ~ 40341208 (+) False AMCG00004257
TU8401 lncRNA upstream 1324091 40148962 ~ 40198962 (+) True G6850
TU8686 lncRNA downstream 75802 41605110 ~ 41606759 (+) True G7101
TU8805 lncRNA downstream 436706 41966014 ~ 41966233 (+) True G7182
TU8861 lncRNA downstream 536189 42065497 ~ 42067725 (+) True G7221
TU8872 lncRNA downstream 558483 42087791 ~ 42089653 (+) True G7231
TU8918 lncRNA downstream 804117 42333425 ~ 42336643 (+) True G7272
AMCG00004289 mRNA upstream 5663 41464947 ~ 41517390 (+) True AMCG00004289
AMCG00004286 mRNA upstream 135430 41376868 ~ 41387623 (+) True AMCG00004286
AMCG00004280 mRNA upstream 511295 41000647 ~ 41011758 (+) True AMCG00004280
AMCG00004278 mRNA upstream 582289 40938585 ~ 40940764 (+) True AMCG00004278
AMCG00004276 mRNA upstream 601579 40906392 ~ 40921474 (+) True AMCG00004276
AMCG00004291 mRNA downstream 13768 41543076 ~ 41550969 (+) True AMCG00004291
AMCG00004292 mRNA downstream 39101 41568409 ~ 41600974 (+) True AMCG00004292
AMCG00004293 mRNA downstream 123307 41652615 ~ 41666407 (+) True AMCG00004293
AMCG00004294 mRNA downstream 175802 41705110 ~ 41730436 (+) True AMCG00004294
AMCG00004295 mRNA downstream 300431 41829739 ~ 41852260 (+) True AMCG00004295
TU8679 other upstream 15822 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 4522895 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 4631307 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 4748530 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 5248123 36272192 ~ 36274930 (+) False AMCG00004167
TU8899 other downstream 683202 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 1159471 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 4432702 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 6617580 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 7403142 48932450 ~ 48934095 (+) True G8099

Expression Profile