RNA id: TU8805



Basic Information


Item Value
RNA id TU8805
length 220
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G7182
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41966014 ~ 41966233 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ccagttttgactcatatgtccaaaggacattctcccagaaggattgtggcttgtcaatatgcattttagcaaattccagtctggcttttttatgttttctttcaaaagtggagtcctcctgggtcttcttccatggaggccactttcactcaaaaagcgacggatggtgcgatcagaaactgacgtaccttcaccttggagttcagcttgtatctctttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8686 lncRNA upstream 359255 41605110 ~ 41606759 (+) True G7101
TU8687 lncRNA upstream 436706 41523053 ~ 41529308 (+) True G7102
TU8666 lncRNA upstream 597536 41367145 ~ 41368478 (+) True G7084
TU8658 lncRNA upstream 601948 41295298 ~ 41364066 (+) True G7078
TU8623 lncRNA upstream 987695 40977999 ~ 40978319 (+) True G7048
TU8861 lncRNA downstream 99264 42065497 ~ 42067725 (+) True G7221
TU8872 lncRNA downstream 121558 42087791 ~ 42089653 (+) True G7231
TU8918 lncRNA downstream 367192 42333425 ~ 42336643 (+) True G7272
TU8928 lncRNA downstream 398635 42364868 ~ 42365654 (+) True G7278
TU8939 lncRNA downstream 410392 42376625 ~ 42379961 (+) True G7288
AMCG00004296 mRNA upstream 1540 41949371 ~ 41964474 (+) True AMCG00004296
AMCG00004297 mRNA upstream 49926 41896251 ~ 41916088 (+) True AMCG00004297
AMCG00004295 mRNA upstream 113754 41829739 ~ 41852260 (+) True AMCG00004295
AMCG00004294 mRNA upstream 235578 41705110 ~ 41730436 (+) True AMCG00004294
AMCG00004293 mRNA upstream 299607 41652615 ~ 41666407 (+) True AMCG00004293
AMCG00004299 mRNA downstream 44452 42010685 ~ 42024740 (+) True AMCG00004299
AMCG00004298 mRNA downstream 63144 42029377 ~ 42045091 (+) True AMCG00004298
AMCG00004301 mRNA downstream 81410 42047643 ~ 42065411 (+) True AMCG00004301
AMCG00004300 mRNA downstream 103295 42069528 ~ 42083842 (+) True AMCG00004300
AMCG00004303 mRNA downstream 123638 42089871 ~ 42098322 (+) True AMCG00004303
TU8679 other upstream 458783 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 4965856 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 5074268 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 5191491 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 5691084 36272192 ~ 36274930 (+) False AMCG00004167
TU8899 other downstream 246277 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 722546 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 3995777 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 6180655 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 6966217 48932450 ~ 48934095 (+) True G8099

Expression Profile