RNA id: TU8861


Basic Information

Item Value
RNA id TU8861
length 1864
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G7221
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42065497 ~ 42067725 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTAATGAAACCAGCTTTCTGTAAATCTGGTTTGAGATTTTGGAGTCCTCCTTCTGTGCTTAAACTTTACTCATTTATAATGTAACTATGTCCTATGGCTAAAGTGCACCATAAATCATTAGGCTTAGactgtgttaaaaatataaatgtttatgaaaaatacttttctatAGACCTTTATCTGGGTGCTGGAATACAAAATTCCTTATGAGGAAATCTGACATGACCTGAAACTGACCAAGGTTCATGAAGTAACAGCCCGGATCAGAGTGCACCGGACCTATCATAcaaatggctttttaaatatatatactataatgATTGTTCTACAAAACATCTGTATATGTAAAATCCACGTCCAGTATTTCATTATAAGCACTGGAAAGTCTGCCACATTTCAGAAATTGAAATTGGTTTTATATGGAGAGCACTCGGCCGTTCCTTTCCAATGGGTGAAAtcttgcttttatatttattgtacattatgACTATTTAATTACCTCCATGGAGATATTCTCAGAACTATCTTGTGGATGGCaacgtttttatttaaatgcagaaactatttttttcctttttgtaccatctgatataaaaacaaaatcaaagattTGGCTTTATGTGAAACTTGGTATTCAGTGAgatgttaaaatacaaactgcACTTTCCACACAGTACACAATATGTAACCTTAGTAAAGAGTAGCTAAACTTAACAtggtgtgatttaaaaaataaaacccctttTAACAAAAACCTGTGTATTTTCTGTGTACTGCCATTCATGAGCATGTAGATTAGAACATTTTATACTTCCTAAAGGTCTGGTTAAGCTATGTGAACTTAACTGCTATTCTTTAAAACCTCTGCCTGGAGTGTTACTGTACTGAGCTCTAGGTAGAAGTCTAATTTTGgatgttaattttgtattttattaaactaaactgcTTGCCTTATATTTTGCATTCCAGCTTAACACTGTCTGTTAGCTTAACCCTTGTACAATTAGCTTCTGCTGAGACTTGTTTGTCTAGTTCTCTCCGTGTACAGTGTATGAAAGGGCTTGTCAgggttacaaatacaaactgaagCACTGCAGTTCTCCAGGACTGTAAACCACTGCCTCATGTGCACATCAGAAAGTAAACTATGATTTCCAtaagaaaaactatttattcACAACACATTTTCCACACACTCATTTACAGGAGCAATCAACGGTCCGGTGTCATAATTCAGTCCGCAAGAGATGGTCCCCAACTTCAACCTGTCGGTGAATAAAACAACCATTACCTACATAACACTAAATGGAGAAGACCTACGACCTACTGGAAAGTGCTTCATTATAGCCAAACCATTTACTTCAATTATTGGGCTTAATGCCTGGGAAATGTTCAGTGATTTACACTAGAGAGACCACTGTTTAGTATATTCCTAACCGATTTATATGAAACCCTGAAGTAGATAGTATTTGCACATAAAAACGTGCATTCTTCATGCATATATAACTGAAATGCACACCGTGAATTTAAACTCCACCTTTCACACCGGGCTCCTCTTCACTCCAGTTTCTTTGGGTTGTTGACGGCCACATAGTGATAAAGGACCACCAGGAGGAACAGCGAGACCCCCAGCATGTTGGCGAAGATGGCCAGTTGCACGTCCGTCACCATTTTGCAATTGGGTTTTACACACAAGTAATCTGTACGAAAAACTAGTTTCTTTCACGACGCACAGTCGCTTCCTGCTGTTTCAGCCACGTCACGCAACTTCACAGGAGCGACGTGTAGAACGCTGTGACGGGAACGTCATTTCCCTACGTCATCACGTTGAAGTAGCGAGACTGTCACGTGATATGGCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8805 lncRNA upstream 99264 41966014 ~ 41966233 (+) True G7182
TU8686 lncRNA upstream 458738 41605110 ~ 41606759 (+) True G7101
TU8687 lncRNA upstream 536189 41523053 ~ 41529308 (+) True G7102
TU8666 lncRNA upstream 697019 41367145 ~ 41368478 (+) True G7084
TU8658 lncRNA upstream 701431 41295298 ~ 41364066 (+) True G7078
TU8872 lncRNA downstream 20066 42087791 ~ 42089653 (+) True G7231
TU8918 lncRNA downstream 265700 42333425 ~ 42336643 (+) True G7272
TU8928 lncRNA downstream 297143 42364868 ~ 42365654 (+) True G7278
TU8939 lncRNA downstream 308900 42376625 ~ 42379961 (+) True G7288
TU8944 lncRNA downstream 407851 42475576 ~ 42475886 (+) True G7293
AMCG00004301 mRNA upstream 86 42047643 ~ 42065411 (+) True AMCG00004301
AMCG00004298 mRNA upstream 20406 42029377 ~ 42045091 (+) True AMCG00004298
AMCG00004299 mRNA upstream 40757 42010685 ~ 42024740 (+) True AMCG00004299
AMCG00004296 mRNA upstream 101023 41949371 ~ 41964474 (+) True AMCG00004296
AMCG00004297 mRNA upstream 149409 41896251 ~ 41916088 (+) True AMCG00004297
AMCG00004300 mRNA downstream 1803 42069528 ~ 42083842 (+) True AMCG00004300
AMCG00004303 mRNA downstream 22146 42089871 ~ 42098322 (+) True AMCG00004303
AMCG00004304 mRNA downstream 142705 42210430 ~ 42214749 (+) True AMCG00004304
AMCG00004305 mRNA downstream 152295 42220020 ~ 42259741 (+) True AMCG00004305
AMCG00004309 mRNA downstream 270789 42338514 ~ 42347082 (+) True AMCG00004309
TU8679 other upstream 558266 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 5065339 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 5173751 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 5290974 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 5790567 36272192 ~ 36274930 (+) False AMCG00004167
TU8899 other downstream 144785 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 621054 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 3894285 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 6079163 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 6864725 48932450 ~ 48934095 (+) True G8099

Expression Profile